RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	MXR1	P40029	184 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	IRR1	P40541	1150 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	ENV11	P53246	860 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	YLR225C	Q05948	407 aa	Known RBP	2.98	□□□□□ -1.93
SNU114	YKL173W	SOD2	P00447	233 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	GEM1	P39722	662 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	IRC24	P40580	263 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	ACM1	Q08981	209 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	REV3	P14284	1504 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	MDS3	P53094	1487 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	CIT1	P00890	479 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	MEF1	P25039	761 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	SEC6	P32844	805 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	CCZ1	P38273	704 aa		2.98	□□□□□ -1.93
SNU114	YKL173W	COQ4	O13525	335 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	RAD27	P26793	382 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	DOM34	P33309	386 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	ATG14	P38270	344 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	UBP5	P39944	805 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	RRT14	P40470	206 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	UTP8	P53276	713 aa	Known RBP	2.97	□□□□□ -1.93
SNU114	YKL173W	MSC2	Q03455	724 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	PLB2	Q03674	706 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	YOR378W	Q08902	515 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	SPS1	P08458	490 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	TOP3	P13099	656 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	EAF1	Q06337	982 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	YLR001C	Q07895	862 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	YLL058W	Q12198	575 aa		2.97	□□□□□ -1.93
SNU114	YKL173W	BI4	P03879	638 aa		2.96	□□□□□ -1.94
SNU114	YKL173W	HSP60	P19882	572 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	HBS1	P32769	611 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	AIM26	P32858	118 aa		2.96	□□□□□ -1.94
SNU114	YKL173W	FUI1	P38196	639 aa		2.96	□□□□□ -1.94
SNU114	YKL173W	ETP1	P38748	585 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	NBA1	Q08229	501 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	INO1	P11986	533 aa		2.96	□□□□□ -1.94
SNU114	YKL173W	GAS1	P22146	559 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	MOT2	P34909	587 aa	Known RBP	2.96	□□□□□ -1.94
SNU114	YKL173W	PIF1	P07271	859 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	SBA1	P28707	216 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	AFR1	P33304	620 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	PRP43	P53131	767 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	BUL2	Q03758	920 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	SPO75	Q07798	868 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	ESC1	Q03661	1658 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
SNU114	YKL173W	MBP1	P39678	833 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	TAF1	P46677	1066 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	YGL176C	P46945	554 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	SNO2	P53823	222 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	SUB1	P54000	292 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	TMA17	Q12513	150 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
SNU114	YKL173W	GGA2	P38817	585 aa	Known RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	MEF2	P39677	819 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	NPP2	P39997	493 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	HSV2	P50079	448 aa	Predicted RBP	2.95	□□□□□ -1.94
SNU114	YKL173W	ERP6	P53198	216 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
SNU114	YKL173W	TFB2	Q02939	513 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	HRQ1	Q05549	1077 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	YPL277C	Q08989	487 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	OSH2	Q12451	1283 aa		2.95	□□□□□ -1.94
SNU114	YKL173W	GAL11	P19659	1081 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	MRC1	P25588	1096 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	MRP8	P35719	219 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	GDH3	P39708	457 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	IES5	P40060	125 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	HFM1	P51979	1187 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	YKE2	P52553	114 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	RIM8	P53179	542 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	UGO1	Q03327	502 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	MDM12	Q92328	271 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	HBN1	Q96VH4	193 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	CYC1	P00044	109 aa	Predicted RBP	2.94	□□□□□ -1.94
SNU114	YKL173W	RPS13	P05756	151 aa	Known RBP	2.94	□□□□□ -1.94
SNU114	YKL173W	YCR015C	P25616	317 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	YKL107W	P34251	309 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	RFC5	P38251	354 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	PBY1	P38254	753 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	LAM1	P38851	1228 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	YGR237C	P50089	785 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	VPS72	Q03388	795 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	XYL2	Q07993	356 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	SVS1	Q12254	260 aa		2.94	□□□□□ -1.94
SNU114	YKL173W	ARE1	P25628	610 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	CDC12	P32468	407 aa	Known RBP	2.93	□□□□□ -1.94
SNU114	YKL173W	GRX7	P38068	203 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	MCM7	P38132	845 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	AIM3	P38266	947 aa	Known RBP	2.93	□□□□□ -1.94
SNU114	YKL173W	YNL193W	P53870	558 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	COG6	P53959	839 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	GCN5	Q03330	439 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	SGD1	Q06132	899 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	FLR1	P38124	548 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	YBR238C	P38330	731 aa	Known RBP	2.93	□□□□□ -1.94
SNU114	YKL173W	CCC2	P38995	1004 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	ALR2	P43553	858 aa		2.93	□□□□□ -1.94
SNU114	YKL173W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	2.93	□□□□□ -1.94	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms