RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFA1	YKL028W	NIC96	P34077	839 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
TFA1	YKL028W	RRP8	P38961	392 aa	Known RBP	5.14	□□□□□ -1.59
TFA1	YKL028W	CCC2	P38995	1004 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	TAF1	P46677	1066 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	YJR124C	P47159	448 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	SRB7	P47822	140 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	PBP1	P53297	722 aa	Known RBP	5.14	□□□□□ -1.59
TFA1	YKL028W	PAP2	P53632	584 aa	Known RBP	5.14	□□□□□ -1.59
TFA1	YKL028W	YML131W	Q03102	365 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	MLC2	Q06580	163 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	RKM4	Q12504	494 aa		5.14	□□□□□ -1.59
TFA1	YKL028W	HVG1	P0CE11	249 aa		5.13	□□□□□ -1.59
TFA1	YKL028W	VBA3	P25594	458 aa		5.13	□□□□□ -1.59
TFA1	YKL028W	PYC2	P32327	1180 aa	Known RBP	5.13	□□□□□ -1.59
TFA1	YKL028W	MOT2	P34909	587 aa	Known RBP	5.13	□□□□□ -1.59
TFA1	YKL028W	RSC8	P43609	557 aa	Known RBP	5.13	□□□□□ -1.59
TFA1	YKL028W	DUG1	P43616	481 aa	Known RBP	5.13	□□□□□ -1.59
TFA1	YKL028W	YNR065C	P53751	1116 aa		5.13	□□□□□ -1.59
TFA1	YKL028W	NOG1	Q02892	647 aa	Known RBP	5.13	□□□□□ -1.59
TFA1	YKL028W	TOP3	P13099	656 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	SCT1	P32784	759 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	TFC3	P34111	1160 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	YKL133C	P36066	463 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	MBP1	P39678	833 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	RPS0B	P46654	252 aa	Known RBP	5.12	□□□□□ -1.59
TFA1	YKL028W	YOL087C	Q99247	1116 aa		5.12	□□□□□ -1.59
TFA1	YKL028W	CDC31	P06704	161 aa	Known RBP	5.11	□□□□□ -1.59
TFA1	YKL028W	RAD53	P22216	821 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	YEL1	P34225	687 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	APL2	P36000	726 aa	Predicted RBP	5.11	□□□□□ -1.59
TFA1	YKL028W	RDH54	P38086	958 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	RIM11	P38615	370 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	SAP185	P40856	1058 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	UBP6	P43593	499 aa	Known RBP	5.11	□□□□□ -1.59
TFA1	YKL028W	ECL1	P48235	211 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	UBA2	P52488	636 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	PEX13	P80667	386 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	SNP1	Q00916	300 aa	Predicted RBP	5.11	□□□□□ -1.59
TFA1	YKL028W	ROD1	Q02805	837 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	DFG16	Q99234	619 aa		5.11	□□□□□ -1.59
TFA1	YKL028W	AEP2	P22136	580 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	MSH3	P25336	1018 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	KCC4	P25389	1037 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	DBF20	P32328	564 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	YKL107W	P34251	309 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	YHL041W	P38730	149 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	NDE1	P40215	560 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	FET4	P40988	552 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	NIT2	P47016	307 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	YJR096W	P47137	282 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	MET13	P53128	600 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	BUL2	Q03758	920 aa	Known RBP	5.1	□□□□□ -1.59
TFA1	YKL028W	TIF35	Q04067	274 aa	Known RBP	5.1	□□□□□ -1.59
TFA1	YKL028W	TSR2	Q06672	205 aa	Known RBP	5.1	□□□□□ -1.59
TFA1	YKL028W	REH1	Q06709	432 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	YPL066W	Q12194	479 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	GLO4	Q12320	285 aa		5.1	□□□□□ -1.59
TFA1	YKL028W	SRD1	P09007	221 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	APA1	P16550	321 aa	Known RBP	5.09	□□□□□ -1.59
TFA1	YKL028W	SWI3	P32591	825 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	DOM34	P33309	386 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	WHI3	P34761	661 aa	Known RBP	5.09	□□□□□ -1.59
TFA1	YKL028W	MNT3	P40549	630 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	MMM1	P41800	426 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	MEH1	Q02205	184 aa		5.09	□□□□□ -1.59
TFA1	YKL028W	YTM1	Q12024	460 aa	Predicted RBP	5.09	□□□□□ -1.59
TFA1	YKL028W	GAS1	P22146	559 aa	Known RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	PCL2	P25693	308 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	PRP19	P32523	503 aa	Known RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	KTR4	P38131	464 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	YBR284W	P38150	797 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	SHU2	P38957	223 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	FAF1	P40546	346 aa	Predicted RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	YFR016C	P43597	1233 aa	Known RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	YGL176C	P46945	554 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	TAN1	P53072	289 aa	Predicted RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	PRP43	P53131	767 aa	Known RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	SSP2	Q08646	371 aa		5.08	□□□□□ -1.6
TFA1	YKL028W	NEW1	Q08972	1196 aa	Known RBP	5.08	□□□□□ -1.6
TFA1	YKL028W	CDC9	P04819	755 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	RAD18	P10862	487 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	MSD1	P15179	658 aa	Known RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	SFL1	P20134	766 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	YCR015C	P25616	317 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	SYP1	P25623	870 aa	Known RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	IMP2'	P32351	346 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	MCM10	P32354	571 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	RRN3	P36070	627 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	PET10	P36139	283 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	OAF1	P39720	1047 aa	Predicted RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	SAH1	P39954	449 aa	Known RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	GPP2	P40106	250 aa	Known RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	ESL1	P40456	1118 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	HIS6	P40545	261 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	CIT3	P43635	486 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	MPP10	P47083	593 aa	Known RBP	5.07	□□□□□ -1.6
TFA1	YKL028W	SPC19	Q03954	165 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	YMR074C	Q04773	145 aa		5.07	□□□□□ -1.6
TFA1	YKL028W	YOR223W	Q12015	292 aa		5.07	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 41.8 ms