RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W RPS4AP0CX35 261 aaKnown RBP7.03□□□□□ -1.28
PRP40YKL012W RPS4BP0CX36 261 aaKnown RBP7.03□□□□□ -1.28
PRP40YKL012W MDJ1P35191 511 aa7.03□□□□□ -1.28
PRP40YKL012W YBR238CP38330 731 aaKnown RBP7.03□□□□□ -1.28
PRP40YKL012W NIT3P49954 291 aa7.03□□□□□ -1.28
PRP40YKL012W MTC3P53077 123 aa7.03□□□□□ -1.28
PRP40YKL012W MCD4P36051 919 aa7.03□□□□□ -1.28
PRP40YKL012W YDR514CQ04408 483 aa7.03□□□□□ -1.28
PRP40YKL012W TRE2Q08693 809 aa7.03□□□□□ -1.28
PRP40YKL012W YOR378WQ08902 515 aa7.03□□□□□ -1.28
PRP40YKL012W COQ4O13525 335 aa7.02□□□□□ -1.29
PRP40YKL012W CDC48P25694 835 aaKnown RBP7.02□□□□□ -1.29
PRP40YKL012W PCM1P38628 557 aaKnown RBP7.02□□□□□ -1.29
PRP40YKL012W YER158CP40095 573 aa7.02□□□□□ -1.29
PRP40YKL012W YKE2P52553 114 aa7.02□□□□□ -1.29
PRP40YKL012W SRT1Q03175 343 aa7.02□□□□□ -1.29
PRP40YKL012W SND1Q04007 877 aa7.02□□□□□ -1.29
PRP40YKL012W RCL1Q08096 367 aaPredicted RBP7.02□□□□□ -1.29
PRP40YKL012W YDL176WQ12027 708 aa7.02□□□□□ -1.29
PRP40YKL012W SFA1P32771 386 aa7.01□□□□□ -1.29
PRP40YKL012W GIC1P38785 314 aa7.01□□□□□ -1.29
PRP40YKL012W CKB2P38930 258 aa7.01□□□□□ -1.29
PRP40YKL012W PIK1P39104 1066 aa7.01□□□□□ -1.29
PRP40YKL012W NPP2P39997 493 aa7.01□□□□□ -1.29
PRP40YKL012W YJR096WP47137 282 aa7.01□□□□□ -1.29
PRP40YKL012W SNP1Q00916 300 aaPredicted RBP7.01□□□□□ -1.29
PRP40YKL012W HOG1P32485 435 aa7□□□□□ -1.29
PRP40YKL012W PRP19P32523 503 aaKnown RBP7□□□□□ -1.29
PRP40YKL012W PEX14P53112 341 aa7□□□□□ -1.29
PRP40YKL012W EAR1Q03212 550 aa7□□□□□ -1.29
PRP40YKL012W HPF1Q05164 967 aa7□□□□□ -1.29
PRP40YKL012W GUD1Q07729 489 aa7□□□□□ -1.29
PRP40YKL012W CCZ1P38273 704 aa7□□□□□ -1.29
PRP40YKL012W RRT14P40470 206 aa7□□□□□ -1.29
PRP40YKL012W ATP4P05626 244 aa6.99□□□□□ -1.29
PRP40YKL012W FUN30P31380 1131 aa6.99□□□□□ -1.29
PRP40YKL012W ATG33Q06485 197 aa6.99□□□□□ -1.29
PRP40YKL012W REH1Q06709 432 aa6.99□□□□□ -1.29
PRP40YKL012W GAS5Q08193 484 aa6.99□□□□□ -1.29
PRP40YKL012W MPH2P0CD99 609 aa6.98□□□□□ -1.29
PRP40YKL012W ACE2P21192 770 aa6.98□□□□□ -1.29
PRP40YKL012W PER1P25625 357 aa6.98□□□□□ -1.29
PRP40YKL012W BOI2P39969 1040 aa6.98□□□□□ -1.29
PRP40YKL012W TGL2P54857 326 aa6.98□□□□□ -1.29
PRP40YKL012W YTM1Q12024 460 aaPredicted RBP6.98□□□□□ -1.29
PRP40YKL012W GIN4Q12263 1142 aa6.98□□□□□ -1.29
PRP40YKL012W SAM35P14693 329 aa6.97□□□□□ -1.29
PRP40YKL012W SRO9P25567 434 aaKnown RBP6.97□□□□□ -1.29
PRP40YKL012W PWP2P25635 923 aaKnown RBP6.97□□□□□ -1.29
PRP40YKL012W DAS1P47005 663 aa6.97□□□□□ -1.29
PRP40YKL012W BUD9P53226 547 aa6.97□□□□□ -1.29
PRP40YKL012W GUP2Q08929 609 aa6.97□□□□□ -1.29
PRP40YKL012W RSC6P25632 483 aa6.97□□□□□ -1.29
PRP40YKL012W PLC1P32383 869 aa6.97□□□□□ -1.29
PRP40YKL012W YHL012WP38709 493 aa6.97□□□□□ -1.29
PRP40YKL012W DUG1P43616 481 aaKnown RBP6.97□□□□□ -1.29
PRP40YKL012W AIM14P53109 570 aa6.97□□□□□ -1.29
PRP40YKL012W SFB2P53953 876 aa6.97□□□□□ -1.29
PRP40YKL012W VPS24P36095 224 aaKnown RBP6.96□□□□□ -1.3
PRP40YKL012W OAF1P39720 1047 aaPredicted RBP6.96□□□□□ -1.3
PRP40YKL012W PEA2P40091 420 aa6.96□□□□□ -1.3
PRP40YKL012W GZF3P42944 551 aaKnown RBP6.96□□□□□ -1.3
PRP40YKL012W YVC1Q12324 675 aa6.96□□□□□ -1.3
PRP40YKL012W AI3P03877 415 aa6.95□□□□□ -1.3
PRP40YKL012W HMG1P12683 1054 aa6.95□□□□□ -1.3
PRP40YKL012W GAR1P28007 205 aaKnown RBP6.95□□□□□ -1.3
PRP40YKL012W HIR1P32479 840 aa6.95□□□□□ -1.3
PRP40YKL012W YNR014WP53719 212 aa6.95□□□□□ -1.3
PRP40YKL012W NHX1Q04121 633 aa6.95□□□□□ -1.3
PRP40YKL012W YPR196WQ06595 470 aa6.95□□□□□ -1.3
PRP40YKL012W KAR1P11927 433 aa6.95□□□□□ -1.3
PRP40YKL012W RPC82P32349 654 aa6.95□□□□□ -1.3
PRP40YKL012W MDL2P33311 773 aa6.95□□□□□ -1.3
PRP40YKL012W JSN1P47135 1091 aaKnown RBP RIP-Chip data6.95□□□□□ -1.3not detected
PRP40YKL012W HXT16P47185 567 aa6.95□□□□□ -1.3
PRP40YKL012W TAD1P53065 400 aa6.95□□□□□ -1.3
PRP40YKL012W VPS72Q03388 795 aa6.95□□□□□ -1.3
PRP40YKL012W BUD21Q08492 214 aaPredicted RBP6.95□□□□□ -1.3
PRP40YKL012W NYV1Q12255 253 aa6.95□□□□□ -1.3
PRP40YKL012W TFC4P33339 1025 aa6.94□□□□□ -1.3
PRP40YKL012W RPN10P38886 268 aaKnown RBP6.94□□□□□ -1.3
PRP40YKL012W NOG2P53742 486 aaKnown RBP6.94□□□□□ -1.3
PRP40YKL012W YNL034WP53963 612 aa6.94□□□□□ -1.3
PRP40YKL012W YNL018CP53976 612 aa6.94□□□□□ -1.3
PRP40YKL012W OSW2Q12202 724 aa6.94□□□□□ -1.3
PRP40YKL012W DAL7P21826 554 aa6.93□□□□□ -1.3
PRP40YKL012W AEP2P22136 580 aa6.93□□□□□ -1.3
PRP40YKL012W MMM1P41800 426 aa6.93□□□□□ -1.3
PRP40YKL012W SBE2P42223 864 aaKnown RBP6.93□□□□□ -1.3
PRP40YKL012W HFM1P51979 1187 aa6.93□□□□□ -1.3
PRP40YKL012W RSC58Q07979 502 aa6.93□□□□□ -1.3
PRP40YKL012W NBA1Q08229 501 aaKnown RBP6.93□□□□□ -1.3
PRP40YKL012W RSB1Q08417 382 aa6.93□□□□□ -1.3
PRP40YKL012W MPD2Q99316 277 aa6.93□□□□□ -1.3
PRP40YKL012W SST2P11972 698 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W RFA1P22336 621 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W TRK2P28584 889 aa6.92□□□□□ -1.3
PRP40YKL012W MNN11P46985 422 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W NIT2P47016 307 aa6.92□□□□□ -1.3
PRP40YKL012W ALY2P47029 1046 aa6.92□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 38 ms