RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CWC27Q6UX04 472 aaKnown RBP6.64□□□□□ -1.35
SCN1A-216ENST00000637968 SEPT14Q6ZU15 432 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC146Q8IYE0 955 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 SMC3Q9UQE7 1217 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 SGSM2O43147 1006 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 LMOD2Q6P5Q4 547 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 GIMAP6Q6P9H5 292 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 MYLK4Q86YV6 388 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 MICAL1Q8TDZ2 1067 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 SPDL1Q96EA4 605 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 THOC1Q96FV9 657 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 SENP3Q9H4L4 574 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 CHMP3Q9Y3E7 222 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 FHOD1Q9Y613 1164 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 NCOA3Q9Y6Q9 1424 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 NKTRP30414 1462 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 RAD54L2Q9Y4B4 1467 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 SLC8A1P32418 973 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 ICA1Q05084 483 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 FILIP1LQ4L180 1135 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 TNMDQ9H2S6 317 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 ZSCAN16Q9H4T2 348 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 ECM2O94769 699 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 MYBL2P10244 700 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 LRMPQ12912 555 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 ZC3H12AQ5D1E8 599 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 RRP12Q5JTH9 1297 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 ARMC9Q7Z3E5 817 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 GPR161Q8N6U8 529 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 BAG1Q99933 345 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 RBM42Q9BTD8 480 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 GDPD2Q9HCC8 539 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 DNAI1Q9UI46 699 aa6.63□□□□□ -1.35
SCN1A-216ENST00000637968 G3BP2Q9UN86 482 aaKnown RBP6.63□□□□□ -1.35
SCN1A-216ENST00000637968 SEC31AO94979 1220 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 CPP00450 1065 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 DCTN1Q14203 1278 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 C11orf91Q3C1V1 193 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 USP48Q86UV5 1035 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 DZIP1Q86YF9 867 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA1Q92805 767 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 ZBTB10Q96DT7 871 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 KIF9Q9HAQ2 790 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 APAF1O14727 1248 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 PHACTR2O75167 634 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 SCRN1Q12765 414 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 INF2Q27J81 1249 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 MEX3CQ5U5Q3 659 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 BCL2L13Q9BXK5 485 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 EFCAB8A8MWE9 144 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 C21orf2O43822 256 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 SFPQP23246 707 aaKnown RBP eCLIP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 TPP2P29144 1249 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 NEK4P51957 841 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC70Q6NSX1 233 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 PROCA1Q8NCQ7 364 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 ZCRB1Q8TBF4 217 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 TCP11Q8WWU5 503 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 BATF3Q9NR55 127 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 ZNHIT6Q9NWK9 470 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 HSPA4P34932 840 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 BMP2KLQ5H9B9 411 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 CNNM3Q8NE01 707 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 WDR66Q8TBY9 1149 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 CFAP53Q96M91 514 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 BIN2Q9UBW5 565 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 IGF1RP08069 1367 aa6.62□□□□□ -1.35
SCN1A-216ENST00000637968 CFAP65Q6ZU64 1925 aaKnown RBP6.62□□□□□ -1.35
SCN1A-216ENST00000637968 ZSCAN12O43309 604 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 H2AFXP16104 143 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 RPS6KA3P51812 740 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 SNCBQ16143 134 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 HSP90AB2PQ58FF8 381 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 KCNF1Q9H3M0 494 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 ORC3Q9UBD5 711 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 PCDHB15Q9Y5E8 787 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 LAMC3Q9Y6N6 1575 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC69A6NI79 296 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 BRD3Q15059 726 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 FBXW10Q5XX13 1052 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 SPATS2Q86XZ4 545 aaKnown RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 FAM71BQ8TC56 605 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 PPP6R1Q9UPN7 881 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 BICRAQ9NZM4 1560 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA6CA6NDK9 693 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA6BA6NDN3 693 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 ENO4A6NNW6 628 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 COQ9O75208 318 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 CAVIN2O95810 425 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA6DP0CG33 693 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 PECAM1P16284 738 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 ATP2B2Q01814 1243 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 LAMB3Q13751 1172 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 MVPQ14764 893 aaKnown RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 LRRFIP1Q32MZ4 808 aaKnown RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 ACBD5Q5T8D3 534 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 CARD6Q9BX69 1037 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA6AQ9NYA3 693 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 HOOK1Q9UJC3 728 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms