RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GNAI2P04899 355 aa25.24■■□□□ 1.63
CLN3-250ENST00000636839 N4BP2Q86UW6 1770 aaPredicted RBP25.24■■□□□ 1.63
CLN3-250ENST00000636839 GNAI3P08754 354 aa25.24■■□□□ 1.63
CLN3-250ENST00000636839 POTEAQ6S8J7 498 aa25.24■■□□□ 1.63
CLN3-250ENST00000636839 PELP1Q8IZL8 1130 aaKnown RBP25.24■■□□□ 1.63
CLN3-250ENST00000636839 CRKLP46109 303 aaKnown RBP25.23■■□□□ 1.63
CLN3-250ENST00000636839 ANKRD44Q8N8A2 993 aa25.23■■□□□ 1.63
CLN3-250ENST00000636839 JARID2Q92833 1246 aaPredicted RBP25.23■■□□□ 1.63
CLN3-250ENST00000636839 BTAF1O14981 1849 aa25.23■■□□□ 1.63
CLN3-250ENST00000636839 NHSQ6T4R5 1651 aa25.22■■□□□ 1.63
CLN3-250ENST00000636839 NEURL1BA8MQ27 555 aa25.22■■□□□ 1.63
CLN3-250ENST00000636839 ALDH1L1O75891 902 aa25.22■■□□□ 1.63
CLN3-250ENST00000636839 UBTFL1P0CB47 393 aaPredicted RBP25.22■■□□□ 1.63
CLN3-250ENST00000636839 RXRBP28702 533 aa25.22■■□□□ 1.63
CLN3-250ENST00000636839 LINC00116Q8NCU8 138 aa25.21■■□□□ 1.63
CLN3-250ENST00000636839 PDZRN3Q9UPQ7 1066 aa25.21■■□□□ 1.63
CLN3-250ENST00000636839 SBF2Q86WG5 1849 aa25.21■■□□□ 1.63
CLN3-250ENST00000636839 NEXNQ0ZGT2 675 aa25.2■■□□□ 1.63
CLN3-250ENST00000636839 C9orf78Q9NZ63 289 aaPredicted RBP25.2■■□□□ 1.63
CLN3-250ENST00000636839 CCDC87Q9NVE4 849 aa25.2■■□□□ 1.62
CLN3-250ENST00000636839 TRIM37O94972 964 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 RGS3P49796 1198 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 RPAP2Q8IXW5 612 aaPredicted RBP25.19■■□□□ 1.62
CLN3-250ENST00000636839 SMC5Q8IY18 1101 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 ARFGEF2Q9Y6D5 1785 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 PNMA6EA0A0J9YXQ4 647 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 GCKRQ14397 625 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 FAM196AQ6ZSG2 479 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 SMIM5Q71RC9 77 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 BCL11BQ9C0K0 894 aaPredicted RBP25.19■■□□□ 1.62
CLN3-250ENST00000636839 TBC1D2BQ9UPU7 963 aa25.19■■□□□ 1.62
CLN3-250ENST00000636839 GRM8O00222 908 aa25.17■■□□□ 1.62
CLN3-250ENST00000636839 HLFQ16534 295 aa25.17■■□□□ 1.62
CLN3-250ENST00000636839 MYH14Q7Z406 1995 aaKnown RBP25.17■■□□□ 1.62
CLN3-250ENST00000636839 IL6STP40189 918 aaPredicted RBP25.16■■□□□ 1.62
CLN3-250ENST00000636839 EIF5P55010 431 aaKnown RBP25.16■■□□□ 1.62
CLN3-250ENST00000636839 KIF6Q6ZMV9 814 aa25.15■■□□□ 1.62
CLN3-250ENST00000636839 KAZALD1Q96I82 304 aa25.15■■□□□ 1.62
CLN3-250ENST00000636839 NUP188Q5SRE5 1749 aa25.15■■□□□ 1.62
CLN3-250ENST00000636839 ATP8B2P98198 1209 aa25.15■■□□□ 1.62
CLN3-250ENST00000636839 CCNL1Q9UK58 526 aaPredicted RBP25.15■■□□□ 1.62
CLN3-250ENST00000636839 SUCLG2Q96I99 432 aa25.14■■□□□ 1.62
CLN3-250ENST00000636839 MAP3K15Q6ZN16 1313 aa25.14■■□□□ 1.61
CLN3-250ENST00000636839 RTL5Q5HYW3 569 aaPredicted RBP25.13■■□□□ 1.61
CLN3-250ENST00000636839 UTYO14607 1347 aa25.13■■□□□ 1.61
CLN3-250ENST00000636839 DZIP3Q86Y13 1208 aaKnown RBP25.13■■□□□ 1.61
CLN3-250ENST00000636839 DCTPP1Q9H773 170 aa25.13■■□□□ 1.61
CLN3-250ENST00000636839 PPP1R42Q7Z4L9 355 aa25.12■■□□□ 1.61
CLN3-250ENST00000636839 BCL11AQ9H165 835 aa25.12■■□□□ 1.61
CLN3-250ENST00000636839 A0A087WZG4 1122 aa25.12■■□□□ 1.61
CLN3-250ENST00000636839 TCIRG1Q13488 830 aa25.12■■□□□ 1.61
CLN3-250ENST00000636839 UBE3BQ7Z3V4 1068 aa25.12■■□□□ 1.61
CLN3-250ENST00000636839 APBB1O00213 710 aa25.11■■□□□ 1.61
CLN3-250ENST00000636839 EPHA10Q5JZY3 1008 aa25.11■■□□□ 1.61
CLN3-250ENST00000636839 ANKRD45Q5TZF3 282 aa25.11■■□□□ 1.61
CLN3-250ENST00000636839 LRRC4BQ9NT99 713 aa25.11■■□□□ 1.61
CLN3-250ENST00000636839 PDE4AP27815 886 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 NUCB1Q02818 461 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 GCC1Q96CN9 775 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 LNPKQ9C0E8 428 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 COL5A3P25940 1745 aaPredicted RBP25.1■■□□□ 1.61
CLN3-250ENST00000636839 AMIGO3Q86WK7 504 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 ISCA1Q9BUE6 129 aa25.1■■□□□ 1.61
CLN3-250ENST00000636839 CICQ96RK0 1608 aaPredicted RBP25.1■■□□□ 1.61
CLN3-250ENST00000636839 GPTP24298 496 aa25.09■■□□□ 1.61
CLN3-250ENST00000636839 GIGYF2Q6Y7W6 1299 aaKnown RBP25.09■■□□□ 1.61
CLN3-250ENST00000636839 NPM2Q86SE8 214 aaKnown RBP25.09■■□□□ 1.61
CLN3-250ENST00000636839 BICC1Q9H694 974 aaKnown RBP25.09■■□□□ 1.61
CLN3-250ENST00000636839 AFDNP55196 1824 aaKnown RBP25.09■■□□□ 1.61
CLN3-250ENST00000636839 SRGAP3O43295 1099 aa25.08■■□□□ 1.61
CLN3-250ENST00000636839 CWC25Q9NXE8 425 aaPredicted RBP25.08■■□□□ 1.61
CLN3-250ENST00000636839 EXOC6BQ9Y2D4 811 aa25.08■■□□□ 1.61
CLN3-250ENST00000636839 CASP7P55210 303 aa25.08■■□□□ 1.61
CLN3-250ENST00000636839 HMMRO75330 724 aa25.07■■□□□ 1.6
CLN3-250ENST00000636839 CHD1LQ86WJ1 897 aa25.07■■□□□ 1.6
CLN3-250ENST00000636839 RREB1Q92766 1687 aa25.07■■□□□ 1.6
CLN3-250ENST00000636839 SSH3Q8TE77 659 aa25.07■■□□□ 1.6
CLN3-250ENST00000636839 ZNF831Q5JPB2 1677 aa25.06■■□□□ 1.6
CLN3-250ENST00000636839 H7C1W4 665 aa25.06■■□□□ 1.6
CLN3-250ENST00000636839 SMARCA5O60264 1052 aaPredicted RBP25.06■■□□□ 1.6
CLN3-250ENST00000636839 CCDC191Q8NCU4 936 aa25.06■■□□□ 1.6
CLN3-250ENST00000636839 CNTNAP4Q9C0A0 1308 aa25.06■■□□□ 1.6
CLN3-250ENST00000636839 LY75O60449 1722 aa25.06■■□□□ 1.6
CLN3-250ENST00000636839 POLA2Q14181 598 aa25.05■■□□□ 1.6
CLN3-250ENST00000636839 CAMTA2O94983 1202 aa25.05■■□□□ 1.6
CLN3-250ENST00000636839 COL15A1P39059 1388 aa25.05■■□□□ 1.6
CLN3-250ENST00000636839 SYNE4Q8N205 404 aa25.05■■□□□ 1.6
CLN3-250ENST00000636839 ERVV-1B6SEH8 477 aa25.04■■□□□ 1.6
CLN3-250ENST00000636839 GNPATO15228 680 aa25.04■■□□□ 1.6
CLN3-250ENST00000636839 IBTKQ9P2D0 1353 aaPredicted RBP25.04■■□□□ 1.6
CLN3-250ENST00000636839 PROM2Q8N271 834 aa25.03■■□□□ 1.6
CLN3-250ENST00000636839 C16orf71Q8IYS4 520 aaPredicted RBP25.03■■□□□ 1.6
CLN3-250ENST00000636839 TSHZ2Q9NRE2 1034 aa25.03■■□□□ 1.6
CLN3-250ENST00000636839 TRIM28Q13263 835 aaKnown RBP25.02■■□□□ 1.6
CLN3-250ENST00000636839 NLRP10Q86W26 655 aa25.02■■□□□ 1.6
CLN3-250ENST00000636839 FAM89AQ96GI7 184 aa25.02■■□□□ 1.6
CLN3-250ENST00000636839 MTX1Q13505 466 aa25.02■■□□□ 1.6
CLN3-250ENST00000636839 RC3H1Q5TC82 1133 aaKnown RBP25.02■■□□□ 1.6
CLN3-250ENST00000636839 PA2G4Q9UQ80 394 aaKnown RBP25.02■■□□□ 1.6
CLN3-250ENST00000636839 UBN2Q6ZU65 1347 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms