RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 LRP10Q7Z4F1 713 aa24.53■■□□□ 1.52
SQSTM1-216ENST00000626660 XAGE3Q8WTP9 111 aa24.53■■□□□ 1.52
SQSTM1-216ENST00000626660 ZNF652Q9Y2D9 606 aa24.53■■□□□ 1.52
SQSTM1-216ENST00000626660 TCERG1O14776 1098 aaKnown RBP24.52■■□□□ 1.52
SQSTM1-216ENST00000626660 CT47B1P0C2W7 299 aaPredicted RBP24.52■■□□□ 1.52
SQSTM1-216ENST00000626660 TTLL7Q6ZT98 887 aa24.52■■□□□ 1.52
SQSTM1-216ENST00000626660 COPS6Q7L5N1 327 aa24.52■■□□□ 1.52
SQSTM1-216ENST00000626660 COL24A1Q17RW2 1714 aa24.52■■□□□ 1.52
SQSTM1-216ENST00000626660 ZNF428Q96B54 188 aa24.51■■□□□ 1.51
SQSTM1-216ENST00000626660 MAP3K15Q6ZN16 1313 aa24.51■■□□□ 1.51
SQSTM1-216ENST00000626660 ERVV-1B6SEH8 477 aa24.5■■□□□ 1.51
SQSTM1-216ENST00000626660 RGL2O15211 777 aa24.5■■□□□ 1.51
SQSTM1-216ENST00000626660 SLC4A2P04920 1241 aa24.5■■□□□ 1.51
SQSTM1-216ENST00000626660 FKBP8Q14318 412 aa24.5■■□□□ 1.51
SQSTM1-216ENST00000626660 CLEC4GQ6UXB4 293 aa24.49■■□□□ 1.51
SQSTM1-216ENST00000626660 ZBTB3Q9H5J0 574 aa24.49■■□□□ 1.51
SQSTM1-216ENST00000626660 BCL2L12Q9HB09 334 aa24.49■■□□□ 1.51
SQSTM1-216ENST00000626660 NUP98P52948 1817 aa24.48■■□□□ 1.51
SQSTM1-216ENST00000626660 DDX58O95786 925 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-216ENST00000626660 MMP10P09238 476 aa24.47■■□□□ 1.51
SQSTM1-216ENST00000626660 PTGER2P43116 358 aa24.47■■□□□ 1.51
SQSTM1-216ENST00000626660 PHAXQ9H814 394 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-216ENST00000626660 HLFQ16534 295 aa24.45■■□□□ 1.5
SQSTM1-216ENST00000626660 ANKRD13DQ6ZTN6 518 aa24.45■■□□□ 1.5
SQSTM1-216ENST00000626660 PLBD2Q8NHP8 589 aa24.45■■□□□ 1.5
SQSTM1-216ENST00000626660 SGIP1Q9BQI5 828 aa24.45■■□□□ 1.5
SQSTM1-216ENST00000626660 PARP3Q9Y6F1 533 aa24.45■■□□□ 1.5
SQSTM1-216ENST00000626660 NFIXQ14938 502 aa24.44■■□□□ 1.5
SQSTM1-216ENST00000626660 ALDH1L2Q3SY69 923 aa24.44■■□□□ 1.5
SQSTM1-216ENST00000626660 TBC1D9BQ66K14 1250 aa24.44■■□□□ 1.5
SQSTM1-216ENST00000626660 GIGYF2Q6Y7W6 1299 aaKnown RBP24.44■■□□□ 1.5
SQSTM1-216ENST00000626660 BICDL1Q6ZP65 573 aa24.44■■□□□ 1.5
SQSTM1-216ENST00000626660 TM4SF1P30408 202 aa24.43■■□□□ 1.5
SQSTM1-216ENST00000626660 FLIIQ13045 1269 aa24.43■■□□□ 1.5
SQSTM1-216ENST00000626660 RIC3Q7Z5B4 369 aa24.43■■□□□ 1.5
SQSTM1-216ENST00000626660 SETDB2Q96T68 719 aa24.43■■□□□ 1.5
SQSTM1-216ENST00000626660 HSP90AB3PQ58FF7 597 aa24.42■■□□□ 1.5
SQSTM1-216ENST00000626660 SSH1Q8WYL5 1049 aa24.42■■□□□ 1.5
SQSTM1-216ENST00000626660 SMC4Q9NTJ3 1288 aa24.42■■□□□ 1.5
SQSTM1-216ENST00000626660 G2E3Q7L622 706 aa24.41■■□□□ 1.5
SQSTM1-216ENST00000626660 NIP7Q9Y221 180 aaKnown RBP eCLIP24.41■■□□□ 1.5
SQSTM1-216ENST00000626660 ATP10DQ9P241 1426 aa24.41■■□□□ 1.5
SQSTM1-216ENST00000626660 ARFGEF2Q9Y6D5 1785 aa24.41■■□□□ 1.5
SQSTM1-216ENST00000626660 CARMIL3Q8ND23 1372 aa24.41■■□□□ 1.5
SQSTM1-216ENST00000626660 ANKRD36CQ5JPF3 1778 aa24.4■■□□□ 1.5
SQSTM1-216ENST00000626660 DDR1Q08345 913 aa24.4■■□□□ 1.5
SQSTM1-216ENST00000626660 FKBP5Q13451 457 aaPredicted RBP24.4■■□□□ 1.5
SQSTM1-216ENST00000626660 MRPL50Q8N5N7 158 aaKnown RBP24.4■■□□□ 1.5
SQSTM1-216ENST00000626660 POLRMTO00411 1230 aaKnown RBP24.39■■□□□ 1.49
SQSTM1-216ENST00000626660 KSR2Q6VAB6 950 aa24.39■■□□□ 1.49
SQSTM1-216ENST00000626660 BCL2L13Q9BXK5 485 aa24.39■■□□□ 1.49
SQSTM1-216ENST00000626660 RARSP54136 660 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-216ENST00000626660 AFDNP55196 1824 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-216ENST00000626660 PI4KAP2A4QPH2 592 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 NPHP1O15259 732 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 SERPINB2P05120 415 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 GPTP24298 496 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 TCIRG1Q13488 830 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 PI4KAP1Q8N8J0 262 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 MAP3K2Q9Y2U5 619 aa24.37■■□□□ 1.49
SQSTM1-216ENST00000626660 PARP10Q53GL7 1025 aa24.36■■□□□ 1.49
SQSTM1-216ENST00000626660 ZNF34Q8IZ26 560 aa24.36■■□□□ 1.49
SQSTM1-216ENST00000626660 NBPF5PQ86XG9 351 aaPredicted RBP24.35■■□□□ 1.49
SQSTM1-216ENST00000626660 KLHL34Q8N239 644 aa24.35■■□□□ 1.49
SQSTM1-216ENST00000626660 ADCY9O60503 1353 aa24.34■■□□□ 1.49
SQSTM1-216ENST00000626660 NEXNQ0ZGT2 675 aa24.34■■□□□ 1.49
SQSTM1-216ENST00000626660 METTL22Q9BUU2 404 aaPredicted RBP24.34■■□□□ 1.49
SQSTM1-216ENST00000626660 NRXN2Q9P2S2 1712 aa24.34■■□□□ 1.49
SQSTM1-216ENST00000626660 PTPRCP08575 1304 aa24.34■■□□□ 1.49
SQSTM1-216ENST00000626660 FAM177BA6PVY3 158 aa24.33■■□□□ 1.49
SQSTM1-216ENST00000626660 CNBD1Q8NA66 436 aa24.33■■□□□ 1.49
SQSTM1-216ENST00000626660 DNAAF4Q8WXU2 420 aa24.33■■□□□ 1.49
SQSTM1-216ENST00000626660 MYD88Q99836 296 aa24.33■■□□□ 1.49
SQSTM1-216ENST00000626660 NYXQ9GZU5 481 aa24.33■■□□□ 1.49
SQSTM1-216ENST00000626660 KIF16BQ96L93 1317 aa24.33■■□□□ 1.48
SQSTM1-216ENST00000626660 GTF2E1P29083 439 aaPredicted RBP24.32■■□□□ 1.48
SQSTM1-216ENST00000626660 BRPF1P55201 1214 aaPredicted RBP24.32■■□□□ 1.48
SQSTM1-216ENST00000626660 TPTE2Q6XPS3 522 aa24.32■■□□□ 1.48
SQSTM1-216ENST00000626660 PPP1R42Q7Z4L9 355 aa24.32■■□□□ 1.48
SQSTM1-216ENST00000626660 UBN2Q6ZU65 1347 aa24.32■■□□□ 1.48
SQSTM1-216ENST00000626660 IBTKQ9P2D0 1353 aaPredicted RBP24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 ATP5J2-PTCD1G3V325 749 aa24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 ST5P78524 1137 aa24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 NLRP10Q86W26 655 aa24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 ISCA1Q9BUE6 129 aa24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 CD2APQ9Y5K6 639 aa24.31■■□□□ 1.48
SQSTM1-216ENST00000626660 C10orf71Q711Q0 1435 aa24.3■■□□□ 1.48
SQSTM1-216ENST00000626660 TRIM28Q13263 835 aaKnown RBP24.3■■□□□ 1.48
SQSTM1-216ENST00000626660 FHDC1Q9C0D6 1143 aaPredicted RBP24.3■■□□□ 1.48
SQSTM1-216ENST00000626660 KIF13BQ9NQT8 1826 aa24.29■■□□□ 1.48
SQSTM1-216ENST00000626660 SUSD4Q5VX71 490 aa24.29■■□□□ 1.48
SQSTM1-216ENST00000626660 PRR5LQ6MZQ0 368 aa24.29■■□□□ 1.48
SQSTM1-216ENST00000626660 UTP14AQ9BVJ6 771 aaKnown RBP24.29■■□□□ 1.48
SQSTM1-216ENST00000626660 F6X3S4 739 aa24.28■■□□□ 1.48
SQSTM1-216ENST00000626660 NOB1Q9ULX3 412 aaKnown RBP24.28■■□□□ 1.48
SQSTM1-216ENST00000626660 RNF123Q5XPI4 1314 aa24.28■■□□□ 1.48
SQSTM1-216ENST00000626660 IPO8O15397 1037 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-216ENST00000626660 BCAR3O75815 825 aa24.27■■□□□ 1.48
SQSTM1-216ENST00000626660 CCDC191Q8NCU4 936 aa24.27■■□□□ 1.48
SQSTM1-216ENST00000626660 TRMT112Q9UI30 125 aaKnown RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms