RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CAMTA1Q9Y6Y1 1673 aa12.96□□□□□ -0.33
CUX1-221ENST00000622516 NEURL1BA8MQ27 555 aa12.96□□□□□ -0.33
CUX1-221ENST00000622516 RAB3GAP1Q15042 981 aa12.96□□□□□ -0.33
CUX1-221ENST00000622516 LARP1Q6PKG0 1096 aaKnown RBP12.96□□□□□ -0.33
CUX1-221ENST00000622516 CLASRPQ8N2M8 674 aaKnown RBP12.96□□□□□ -0.33
CUX1-221ENST00000622516 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.96□□□□□ -0.337e-7■■□□□ 13.1
CUX1-221ENST00000622516 OVOS2A0A0G2JMS6 1433 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 KAT6BQ8WYB5 2073 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 ST18O60284 1047 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 NEXNQ0ZGT2 675 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 AACSQ86V21 672 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 FMNL2Q96PY5 1086 aa12.96□□□□□ -0.34
CUX1-221ENST00000622516 FOXD4L5Q5VV16 416 aaPredicted RBP12.95□□□□□ -0.34
CUX1-221ENST00000622516 FOXD4L4Q8WXT5 416 aaPredicted RBP12.95□□□□□ -0.34
CUX1-221ENST00000622516 CHAMP1Q96JM3 812 aa12.95□□□□□ -0.34
CUX1-221ENST00000622516 SIPA1L3O60292 1781 aaPredicted RBP12.95□□□□□ -0.34
CUX1-221ENST00000622516 SASH1O94885 1247 aa12.95□□□□□ -0.34
CUX1-221ENST00000622516 EVA1CP58658 441 aa12.95□□□□□ -0.34
CUX1-221ENST00000622516 GCKRQ14397 625 aa12.95□□□□□ -0.34
CUX1-221ENST00000622516 ZCRB1Q8TBF4 217 aaKnown RBP12.95□□□□□ -0.34
CUX1-221ENST00000622516 TLR7Q9NYK1 1049 aaKnown RBP12.95□□□□□ -0.34
CUX1-221ENST00000622516 IFIT2P09913 472 aaKnown RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 UBE3BQ7Z3V4 1068 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 LARP6Q9BRS8 491 aaKnown RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 ZNF330Q9Y3S2 320 aaPredicted RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 C5P01031 1676 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 N4BP2Q86UW6 1770 aaPredicted RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 SCN11AQ9UI33 1791 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 MTX1Q13505 466 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 LRP10Q7Z4F1 713 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 EAF2Q96CJ1 260 aaPredicted RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 XIRP1Q702N8 1843 aaKnown RBP12.94□□□□□ -0.34
CUX1-221ENST00000622516 WDR17Q8IZU2 1322 aa12.94□□□□□ -0.34
CUX1-221ENST00000622516 A1BGP04217 495 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 G3BP1Q13283 466 aaKnown RBP eCLIP12.93□□□□□ -0.34
CUX1-221ENST00000622516 HSP90AB4PQ58FF6 505 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
CUX1-221ENST00000622516 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
CUX1-221ENST00000622516 DTNBO60941 627 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 NBPF26B4DH59 902 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 NBPF14Q5TI25 921 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 NBPF10Q6P3W6 841 aaKnown RBP12.93□□□□□ -0.34
CUX1-221ENST00000622516 NBPF15Q8N660 670 aa12.93□□□□□ -0.34
CUX1-221ENST00000622516 CPDO75976 1380 aa12.92□□□□□ -0.34
CUX1-221ENST00000622516 TTLL7Q6ZT98 887 aa12.92□□□□□ -0.34
CUX1-221ENST00000622516 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
CUX1-221ENST00000622516 CIZ1Q9ULV3 898 aaPredicted RBP12.92□□□□□ -0.34
CUX1-221ENST00000622516 SOS2Q07890 1332 aaPredicted RBP12.92□□□□□ -0.34
CUX1-221ENST00000622516 NDUFB9Q9Y6M9 179 aa12.92□□□□□ -0.34
CUX1-221ENST00000622516 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 A0A087WZG4 1122 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 BOLA2Q9H3K6 86 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 CPA1P15085 419 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 MCCP23508 829 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 TMX3Q96JJ7 454 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 GBP4Q96PP9 640 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 ZBTB3Q9H5J0 574 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.91□□□□□ -0.34
CUX1-221ENST00000622516 CHMP3Q9Y3E7 222 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 TUBGCP6Q96RT7 1819 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 LMTK3Q96Q04 1460 aa12.91□□□□□ -0.34
CUX1-221ENST00000622516 SGSM2O43147 1006 aa12.9□□□□□ -0.34
CUX1-221ENST00000622516 GLRX3O76003 335 aaKnown RBP12.9□□□□□ -0.34
CUX1-221ENST00000622516 IL2RBP14784 551 aa12.9□□□□□ -0.34
CUX1-221ENST00000622516 EDC3Q96F86 508 aaKnown RBP12.9□□□□□ -0.34
CUX1-221ENST00000622516 AOX1Q06278 1338 aa12.9□□□□□ -0.34
CUX1-221ENST00000622516 ADAMTS7Q9UKP4 1686 aa12.9□□□□□ -0.34
CUX1-221ENST00000622516 RASEFQ8IZ41 740 aa12.9□□□□□ -0.34
CUX1-221ENST00000622516 DDX11L8A8MPP1 907 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 UTYO14607 1347 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 STRCQ7RTU9 1775 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 PCDH11XQ9BZA7 1347 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 PCDH11YQ9BZA8 1340 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 DIAPH3Q9NSV4 1193 aa12.9□□□□□ -0.35
CUX1-221ENST00000622516 FOXD4L6Q3SYB3 417 aaPredicted RBP12.89□□□□□ -0.35
CUX1-221ENST00000622516 FOXD4L3Q6VB84 417 aaPredicted RBP12.89□□□□□ -0.35
CUX1-221ENST00000622516 BAG4O95429 457 aaKnown RBP12.89□□□□□ -0.35
CUX1-221ENST00000622516 PTH1RQ03431 593 aa12.89□□□□□ -0.35
CUX1-221ENST00000622516 MCTP1Q6DN14 999 aa12.89□□□□□ -0.35
CUX1-221ENST00000622516 COL5A2P05997 1499 aaPredicted RBP12.88□□□□□ -0.35
CUX1-221ENST00000622516 ERC1Q8IUD2 1116 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 FAM227BQ96M60 508 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 BTG4Q9NY30 223 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 HDAC5Q9UQL6 1122 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 TTC41PQ6P2S7 1318 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 HSPA4P34932 840 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 KIAA1211Q6ZU35 1233 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 LSG1Q9H089 658 aaKnown RBP12.88□□□□□ -0.35
CUX1-221ENST00000622516 ZDHHC9Q9Y397 364 aa12.88□□□□□ -0.35
CUX1-221ENST00000622516 CHGBP05060 677 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 CARD10Q9BWT7 1032 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 TFCP2Q12800 502 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 LMBR1LQ6UX01 489 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 GPATCH3Q96I76 525 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 PTPN12Q05209 780 aaKnown RBP12.87□□□□□ -0.35
CUX1-221ENST00000622516 CCDC85AQ96PX6 553 aaPredicted RBP12.87□□□□□ -0.35
CUX1-221ENST00000622516 ASAP1Q9ULH1 1129 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 SNX14Q9Y5W7 946 aa12.87□□□□□ -0.35
CUX1-221ENST00000622516 PLBD2Q8NHP8 589 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms