RNA–Protein interactions for RNA: ENST00000621708.4

PCDH15-233, Transcript of protocadherin related 15, human

APPRIS ALT2 TSL 5 BASIC

Gene PCDH15, Length 5,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-233	ENST00000621708	PPP4R3B	Q5MIZ7	849 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	DDX21	Q9NR30	783 aa	Known RBP eCLIP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	NUCB1	Q02818	461 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	CCDC70	Q6NSX1	233 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	ORAI2	Q96SN7	254 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	BTG4	Q9NY30	223 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	FAM13B	Q9NYF5	915 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	CEP131	Q9UPN4	1083 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	BLM	P54132	1417 aa	Predicted RBP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	SMARCA5	O60264	1052 aa	Predicted RBP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	BAG3	O95817	575 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	ANKRD18A	Q8IVF6	992 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	CCAR1	Q8IX12	1150 aa	Known RBP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	RHPN1	Q8TCX5	695 aa		10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.32	□□□□□ -0.76
PCDH15-233	ENST00000621708	POLR3D	P05423	398 aa	Predicted RBP	10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	PLA2R1	Q13018	1463 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	ANKAR	Q7Z5J8	1434 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	NFKBIB	Q15653	356 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	TTC22	Q5TAA0	569 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	NLRP3	Q96P20	1036 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	NUP133	Q8WUM0	1156 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	ATP5J2-PTCD1	G3V325	749 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	CAST	P20810	708 aa	Known RBP	10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	MRE11	P49959	708 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	HMGN5	P82970	282 aa	Known RBP	10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	ATP2B2	Q01814	1243 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	CCDC178	Q5BJE1	867 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	IQCA1	Q86XH1	822 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	NFATC2IP	Q8NCF5	419 aa		10.31	□□□□□ -0.76
PCDH15-233	ENST00000621708	MTMR7	Q9Y216	660 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	RTCB	Q9Y3I0	505 aa	Known RBP	10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	ZNF213	O14771	459 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	PARP10	Q53GL7	1025 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	TTC41P	Q6P2S7	1318 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	KIAA0232	Q92628	1395 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	LMTK2	Q8IWU2	1503 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	DZIP3	Q86Y13	1208 aa	Known RBP	10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	CFAP65	Q6ZU64	1925 aa	Known RBP	10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	PHACTR3	Q96KR7	559 aa		10.3	□□□□□ -0.76
PCDH15-233	ENST00000621708	MET	P08581	1390 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	SLC39A6	Q13433	755 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	TPTE2	Q6XPS3	522 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	PHAX	Q9H814	394 aa	Known RBP	10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	MKNK2	Q9HBH9	465 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	TRAK2	O60296	914 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	PRPF40B	Q6NWY9	871 aa	Known RBP	10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	CHL1	O00533	1208 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	STIM1	Q13586	685 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	FILIP1L	Q4L180	1135 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	ERVV-2	B6SEH9	535 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	MEIS3	Q99687	375 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	A2ML1	A8K2U0	1454 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	MAP3K4	Q9Y6R4	1608 aa		10.29	□□□□□ -0.76
PCDH15-233	ENST00000621708	ZNF790	Q6PG37	636 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	CTCFL	Q8NI51	663 aa	Predicted RBP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	SLC52A2	Q9HAB3	445 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	TMEM94	Q12767	1356 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	STK3	Q13188	491 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	ANKRD2	Q9GZV1	360 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	C6orf229	H3BNL8	230 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	ATP2B3	Q16720	1220 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	PLBD2	Q8NHP8	589 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	TSPY26P	Q9H489	355 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	SEC63	Q9UGP8	760 aa	Known RBP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	SPHKAP	Q2M3C7	1700 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	EPS15	P42566	896 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	ACSBG1	Q96GR2	724 aa		10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	MAGEC2	Q9UBF1	373 aa	Predicted RBP	10.28	□□□□□ -0.76
PCDH15-233	ENST00000621708	FIBP	O43427	364 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	NBPF14	Q5TI25	921 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	LIMCH1	Q9UPQ0	1083 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	ADGRB3	O60242	1522 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	RNF17	Q9BXT8	1623 aa	Known RBP	10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	PRPF40A	O75400	957 aa	Known RBP	10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	PDE4B	Q07343	736 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	CCDC192	P0DO97	292 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	GOLGA6L1	Q8N7Z2	621 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	CDC42BPB	Q9Y5S2	1711 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	ERBB4	Q15303	1308 aa		10.27	□□□□□ -0.77
PCDH15-233	ENST00000621708	GOLIM4	O00461	696 aa		10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	WDHD1	O75717	1129 aa	Predicted RBP	10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	KRT18	P05783	430 aa	Known RBP	10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	HLA-DOA	P06340	250 aa		10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	ANAPC15	P60006	121 aa		10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	LMBR1L	Q6UX01	489 aa		10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	CCDC39	Q9UFE4	941 aa		10.26	□□□□□ -0.77
PCDH15-233	ENST00000621708	CCP110	O43303	1012 aa		10.26	□□□□□ -0.77

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