RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PRR36Q9H6K5 1346 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 PNMA6EA0A0J9YXQ4 647 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 KLHDC4Q8TBB5 520 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 RAI14Q9P0K7 980 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 ARAP3Q8WWN8 1544 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 MROH2AA6NES4 1674 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 ZGPATQ8N5A5 531 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 ZCRB1Q8TBF4 217 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 CHL1O00533 1208 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 ME1P48163 572 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 STK38Q15208 465 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 SAFBQ15424 915 aaKnown RBP eCLIP10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 LETM1O95202 739 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 BAG4O95429 457 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 HAND2P61296 217 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 KSR2Q6VAB6 950 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 ZSCAN31Q96LW9 406 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 SDF4Q9BRK5 362 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 TRIM5Q9C035 493 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 SBNO2Q9Y2G9 1366 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 NMIQ13287 307 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 CCDC144CPQ8IYA2 1237 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 GRM8O00222 908 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 SMC2O95347 1197 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 TDO2P48775 406 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 CCDC34Q96HJ3 373 aa10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 IFIT5Q13325 482 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-222ENST00000615540 HSP90AA2PQ14568 343 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 CCAR2Q8N163 923 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 ZNF396Q96N95 335 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 ATP7BP35670 1465 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 TFCP2Q12800 502 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 TULP4Q9NRJ4 1543 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 NLRP1Q9C000 1473 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 CPA1P15085 419 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 AIDAQ96BJ3 306 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 KRT85P78386 507 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 IMMTQ16891 758 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 LRP2BPQ9P2M1 347 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 PDILTQ8N807 584 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 LIMCH1Q9UPQ0 1083 aa10.57□□□□□ -0.72
PDLIM5-222ENST00000615540 PDCP20941 246 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 IGHMBP2P38935 993 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 USP26Q9BXU7 913 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 ABCF2Q9UG63 623 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 KINO60870 393 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 SART3Q15020 963 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 PCMTD1Q96MG8 357 aaPredicted RBP10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 LAMC1P11047 1609 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 PDE4CQ08493 712 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 CNPY2Q9Y2B0 182 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 NDUFB9Q9Y6M9 179 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 PLEKHG1Q9ULL1 1385 aa10.56□□□□□ -0.72
PDLIM5-222ENST00000615540 RBM10P98175 930 aaKnown RBP10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 CADPS2Q86UW7 1296 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 GNL3LQ9NVN8 582 aaKnown RBP10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 ABCC4O15439 1325 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 GSPT1P15170 499 aaKnown RBP10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 ZSCAN23Q3MJ62 389 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 ZSCAN25Q6NSZ9 544 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 AKAP2Q9Y2D5 859 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 ANKRD18BA2A2Z9 1011 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 LMBR1LQ6UX01 489 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 EXOC5O00471 708 aa10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 NBPF7P0C2Y1 421 aaPredicted RBP10.55□□□□□ -0.72
PDLIM5-222ENST00000615540 A2ML1A8K2U0 1454 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 CCDC192P0DO97 292 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 C19orf44Q9H6X5 657 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 IQGAP1P46940 1657 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 NPHP3Q7Z494 1330 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 CHMLP26374 656 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 OLFM4Q6UX06 510 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 CCDC82Q8N4S0 544 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 IL17REQ8NFR9 667 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 PANK2Q9BZ23 570 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 KIDINS220Q9ULH0 1771 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 PLEKHG3A1L390 1219 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 MINDY4BA8MYZ0 360 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 KRT32Q14532 448 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 AEBP2Q6ZN18 517 aaPredicted RBP10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 NUP62CLQ9H1M0 184 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 RBM8AQ9Y5S9 174 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 TFIP11Q9UBB9 837 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 DIP2CQ9Y2E4 1556 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 CCDC129Q6ZRS4 1044 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 CHST3Q7LGC8 479 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 BRMS1Q9HCU9 246 aa10.54□□□□□ -0.72
PDLIM5-222ENST00000615540 PRAMEF22A3QJZ6 481 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 STX6O43752 255 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 HOMER1Q86YM7 354 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 CKAP2LQ8IYA6 745 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 SNX21Q969T3 373 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 NACAP1Q9BZK3 213 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 HOOK1Q9UJC3 728 aaKnown RBP10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 SOS1Q07889 1333 aaPredicted RBP10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 USP6P35125 1406 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 SUCLG2Q96I99 432 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 NAT10Q9H0A0 1025 aaKnown RBP10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 ZC3H13Q5T200 1668 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms