RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.86□□□□□ -0.35
UPF1-213ENST00000601981 TBC1D2BQ9UPU7 963 aa12.86□□□□□ -0.35
UPF1-213ENST00000601981 ANKRD36CQ5JPF3 1778 aa12.86□□□□□ -0.35
UPF1-213ENST00000601981 ZBTB7AO95365 584 aa12.85□□□□□ -0.35
UPF1-213ENST00000601981 DDX58O95786 925 aaKnown RBP12.85□□□□□ -0.35
UPF1-213ENST00000601981 PDIA6Q15084 440 aa12.85□□□□□ -0.35
UPF1-213ENST00000601981 USPL1Q5W0Q7 1092 aa12.85□□□□□ -0.35
UPF1-213ENST00000601981 ARFGEF2Q9Y6D5 1785 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 ERVV-1B6SEH8 477 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 GYS1P13807 737 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 AIMP1Q12904 312 aaKnown RBP12.84□□□□□ -0.35
UPF1-213ENST00000601981 CLEC4GQ6UXB4 293 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 SMIM5Q71RC9 77 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 PELP1Q8IZL8 1130 aaKnown RBP12.84□□□□□ -0.35
UPF1-213ENST00000601981 XAGE3Q8WTP9 111 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 PDGFDQ9GZP0 370 aaPredicted RBP12.84□□□□□ -0.35
UPF1-213ENST00000601981 SRP68Q9UHB9 627 aaKnown RBP12.84□□□□□ -0.35
UPF1-213ENST00000601981 MAP3K15Q6ZN16 1313 aa12.84□□□□□ -0.35
UPF1-213ENST00000601981 ANXA1P04083 346 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 SLC4A2P04920 1241 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 PROSER3Q2NL68 480 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 ALDH1L2Q3SY69 923 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 HSP90AB3PQ58FF7 597 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 MSL1Q68DK7 614 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 COPS6Q7L5N1 327 aa12.83□□□□□ -0.36
UPF1-213ENST00000601981 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
UPF1-213ENST00000601981 CAMTA2O94983 1202 aa12.82□□□□□ -0.36
UPF1-213ENST00000601981 ZBTB3Q9H5J0 574 aa12.82□□□□□ -0.36
UPF1-213ENST00000601981 PPP1R1BQ9UD71 204 aaPredicted RBP12.82□□□□□ -0.36
UPF1-213ENST00000601981 TCERG1O14776 1098 aaKnown RBP12.81□□□□□ -0.36
UPF1-213ENST00000601981 GIGYF2Q6Y7W6 1299 aaKnown RBP12.81□□□□□ -0.36
UPF1-213ENST00000601981 TTLL7Q6ZT98 887 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 ANKRD13DQ6ZTN6 518 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 LRP10Q7Z4F1 713 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 RIC3Q7Z5B4 369 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 PLBD2Q8NHP8 589 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 SMC4Q9NTJ3 1288 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 PARP3Q9Y6F1 533 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 AFDNP55196 1824 aaKnown RBP12.81□□□□□ -0.36
UPF1-213ENST00000601981 CARMIL3Q8ND23 1372 aa12.81□□□□□ -0.36
UPF1-213ENST00000601981 NPHP1O15259 732 aa12.8□□□□□ -0.36
UPF1-213ENST00000601981 MMP10P09238 476 aa12.8□□□□□ -0.36
UPF1-213ENST00000601981 RARSP54136 660 aaKnown RBP12.8□□□□□ -0.36
UPF1-213ENST00000601981 FLIIQ13045 1269 aa12.8□□□□□ -0.36
UPF1-213ENST00000601981 FKBP5Q13451 457 aaPredicted RBP12.8□□□□□ -0.36
UPF1-213ENST00000601981 SETDB2Q96T68 719 aa12.8□□□□□ -0.36
UPF1-213ENST00000601981 PHAXQ9H814 394 aaKnown RBP12.8□□□□□ -0.36
UPF1-213ENST00000601981 ATP10DQ9P241 1426 aa12.79□□□□□ -0.36
UPF1-213ENST00000601981 PLIN1O60240 522 aa12.79□□□□□ -0.36
UPF1-213ENST00000601981 NEXNQ0ZGT2 675 aa12.79□□□□□ -0.36
UPF1-213ENST00000601981 BICDL1Q6ZP65 573 aa12.79□□□□□ -0.36
UPF1-213ENST00000601981 NIP7Q9Y221 180 aaKnown RBP eCLIP12.79□□□□□ -0.36
UPF1-213ENST00000601981 KIF16BQ96L93 1317 aa12.79□□□□□ -0.36
UPF1-213ENST00000601981 BCAR3O75815 825 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 NFIXQ14938 502 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 PARP10Q53GL7 1025 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 TBC1D9BQ66K14 1250 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 KSR2Q6VAB6 950 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 EXOC6Q8TAG9 804 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 SSH1Q8WYL5 1049 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 BCL2L12Q9HB09 334 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 PTPRCP08575 1304 aa12.78□□□□□ -0.36
UPF1-213ENST00000601981 NRXN2Q9P2S2 1712 aa12.77□□□□□ -0.36
UPF1-213ENST00000601981 PTGER2P43116 358 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 PDE3AQ14432 1141 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 HLFQ16534 295 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 PPP1R42Q7Z4L9 355 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 MRPL50Q8N5N7 158 aaKnown RBP12.77□□□□□ -0.37
UPF1-213ENST00000601981 BCL2L13Q9BXK5 485 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 NYXQ9GZU5 481 aa12.77□□□□□ -0.37
UPF1-213ENST00000601981 KIF13BQ9NQT8 1826 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 PI4KAP2A4QPH2 592 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 POLRMTO00411 1230 aaKnown RBP12.76□□□□□ -0.37
UPF1-213ENST00000601981 IPO8O15397 1037 aaKnown RBP12.76□□□□□ -0.37
UPF1-213ENST00000601981 SERPINB2P05120 415 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 GTF2E1P29083 439 aaPredicted RBP12.76□□□□□ -0.37
UPF1-213ENST00000601981 TM4SF1P30408 202 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 TCIRG1Q13488 830 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 NBPF5PQ86XG9 351 aaPredicted RBP12.76□□□□□ -0.37
UPF1-213ENST00000601981 PI4KAP1Q8N8J0 262 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 CRBNQ96SW2 442 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 SGIP1Q9BQI5 828 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 MAP3K2Q9Y2U5 619 aa12.76□□□□□ -0.37
UPF1-213ENST00000601981 IBTKQ9P2D0 1353 aaPredicted RBP12.76□□□□□ -0.37
UPF1-213ENST00000601981 DCAF8L1A6NGE4 600 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 GPTP24298 496 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 YY1P25490 414 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 BRPF1P55201 1214 aaPredicted RBP12.75□□□□□ -0.37
UPF1-213ENST00000601981 ST5P78524 1137 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 C20orf194Q5TEA3 1177 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 TPTE2Q6XPS3 522 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 G2E3Q7L622 706 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 KLHL34Q8N239 644 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 CNBD1Q8NA66 436 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 DNAAF4Q8WXU2 420 aa12.75□□□□□ -0.37
UPF1-213ENST00000601981 METTL22Q9BUU2 404 aaPredicted RBP12.75□□□□□ -0.37
UPF1-213ENST00000601981 N4BP2Q86UW6 1770 aaPredicted RBP12.74□□□□□ -0.37
UPF1-213ENST00000601981 ADCY9O60503 1353 aa12.74□□□□□ -0.37
UPF1-213ENST00000601981 DDR1Q08345 913 aa12.74□□□□□ -0.37
UPF1-213ENST00000601981 B4GALNT3Q6L9W6 998 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms