RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GOLGA8BA8MQT2 603 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 MAP3K9P80192 1104 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 C8orf37Q96NL8 207 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 TSHZ2Q9NRE2 1034 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 IDI1Q13907 227 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 TPTE2Q6XPS3 522 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 APBB1IPQ7Z5R6 666 aaPredicted RBP23.72■■□□□ 1.39
UPF1-207ENST00000599848 ZFYP08048 801 aaPredicted RBP23.71■■□□□ 1.39
UPF1-207ENST00000599848 GPTP24298 496 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 GRIPAP1Q4V328 841 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 MCM10Q7L590 875 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 NME9Q86XW9 330 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 PRXQ9BXM0 1461 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 C8orf76Q96K31 380 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 ZBTB3Q9H5J0 574 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 UHRF1BP1LA0JNW5 1464 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 CACNA2D4Q7Z3S7 1137 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 LRRFIP2Q9Y608 721 aaKnown RBP23.71■■□□□ 1.39
UPF1-207ENST00000599848 DHX29Q7Z478 1369 aaKnown RBP23.71■■□□□ 1.39
UPF1-207ENST00000599848 UBA5Q9GZZ9 404 aa23.71■■□□□ 1.39
UPF1-207ENST00000599848 RTCBQ9Y3I0 505 aaKnown RBP23.71■■□□□ 1.39
UPF1-207ENST00000599848 HOOK3Q86VS8 718 aa23.7■■□□□ 1.39
UPF1-207ENST00000599848 CUL7Q14999 1698 aa23.7■■□□□ 1.38
UPF1-207ENST00000599848 ATP6V1AP38606 617 aa23.7■■□□□ 1.38
UPF1-207ENST00000599848 CCDC148Q8NFR7 591 aa23.7■■□□□ 1.38
UPF1-207ENST00000599848 SCAND2PQ9GZW5 306 aaPredicted RBP23.7■■□□□ 1.38
UPF1-207ENST00000599848 ARAP1Q96P48 1450 aa23.7■■□□□ 1.38
UPF1-207ENST00000599848 CCDC172P0C7W6 258 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 TMTC2Q8N394 836 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 EVI5LQ96CN4 794 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 BMP15O95972 392 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 FAM114A1Q8IWE2 563 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 FANCIQ9NVI1 1328 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 STAMBPO95630 424 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 CCDC174Q6PII3 467 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 TFCP2L1Q9NZI6 479 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 SSX2IPQ9Y2D8 614 aa23.69■■□□□ 1.38
UPF1-207ENST00000599848 CASTP20810 708 aaKnown RBP23.68■■□□□ 1.38
UPF1-207ENST00000599848 NBPF7P0C2Y1 421 aaPredicted RBP23.68■■□□□ 1.38
UPF1-207ENST00000599848 SH2D4AQ9H788 454 aa23.68■■□□□ 1.38
UPF1-207ENST00000599848 HOMER2Q9NSB8 354 aa23.68■■□□□ 1.38
UPF1-207ENST00000599848 USHBP1Q8N6Y0 703 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 RNF214Q8ND24 703 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 ZC3H12CQ9C0D7 883 aaKnown RBP23.67■■□□□ 1.38
UPF1-207ENST00000599848 RBM27Q9P2N5 1060 aaKnown RBP23.67■■□□□ 1.38
UPF1-207ENST00000599848 NUTM1Q86Y26 1132 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 BOLA2Q9H3K6 86 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 C19orf44Q9H6X5 657 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 ARHGAP29Q52LW3 1261 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 SAMM50Q9Y512 469 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 MFSD6Q6ZSS7 791 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 TSPYL1Q9H0U9 437 aa23.67■■□□□ 1.38
UPF1-207ENST00000599848 ANKRD2Q9GZV1 360 aa23.66■■□□□ 1.38
UPF1-207ENST00000599848 TRAK2O60296 914 aa23.66■■□□□ 1.38
UPF1-207ENST00000599848 CTAGE5O15320 804 aa23.65■■□□□ 1.38
UPF1-207ENST00000599848 TBCAO75347 108 aaKnown RBP23.65■■□□□ 1.38
UPF1-207ENST00000599848 KRT23Q9C075 422 aa23.65■■□□□ 1.38
UPF1-207ENST00000599848 BRDTQ58F21 947 aaPredicted RBP23.65■■□□□ 1.38
UPF1-207ENST00000599848 LMTK3Q96Q04 1460 aa23.65■■□□□ 1.38
UPF1-207ENST00000599848 KIF2AO00139 706 aaPredicted RBP23.65■■□□□ 1.38
UPF1-207ENST00000599848 FBXO31Q5XUX0 539 aaPredicted RBP23.65■■□□□ 1.38
UPF1-207ENST00000599848 KANK3Q6NY19 840 aa23.65■■□□□ 1.38
UPF1-207ENST00000599848 GBP3Q9H0R5 595 aa23.65■■□□□ 1.38
UPF1-207ENST00000599848 IL2RBP14784 551 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 LEKR1Q6ZMV7 388 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 DDX12PQ92771 950 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 GIGYF2Q6Y7W6 1299 aaKnown RBP23.64■■□□□ 1.38
UPF1-207ENST00000599848 CDCA7LQ96GN5 454 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 CNNM2Q9H8M5 875 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 TIAM1Q13009 1591 aa23.64■■□□□ 1.38
UPF1-207ENST00000599848 LRSAM1Q6UWE0 723 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 HMG20BQ9P0W2 317 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 COMMD10Q9Y6G5 202 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 ANKRD36BQ8N2N9 1353 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 ECHDC1Q9NTX5 307 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 EXOC6BQ9Y2D4 811 aa23.64■■□□□ 1.37
UPF1-207ENST00000599848 STX6O43752 255 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 SYCP3Q8IZU3 236 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 TAOK3Q9H2K8 898 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 USO1O60763 962 aaKnown RBP23.63■■□□□ 1.37
UPF1-207ENST00000599848 CTNNA2P26232 953 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 PDE6BP35913 854 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 ANO10Q9NW15 660 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 FLIIQ13045 1269 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 SKIDA1Q1XH10 827 aa23.63■■□□□ 1.37
UPF1-207ENST00000599848 NFKBIBQ15653 356 aa23.62■■□□□ 1.37
UPF1-207ENST00000599848 C14orf93Q9H972 538 aaKnown RBP23.62■■□□□ 1.37
UPF1-207ENST00000599848 CALRP27797 417 aaKnown RBP23.62■■□□□ 1.37
UPF1-207ENST00000599848 ANKRD13DQ6ZTN6 518 aa23.62■■□□□ 1.37
UPF1-207ENST00000599848 ACEP12821 1306 aa23.62■■□□□ 1.37
UPF1-207ENST00000599848 TAX1BP1Q86VP1 789 aa23.62■■□□□ 1.37
UPF1-207ENST00000599848 KIAA0754O94854 1291 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 CA8P35219 290 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 TNPO1Q92973 898 aaKnown RBP23.61■■□□□ 1.37
UPF1-207ENST00000599848 MCM3P25205 808 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 MAP3K11Q16584 847 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 CCDC83Q8IWF9 413 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 CKAP2LQ8IYA6 745 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 GTPBP4Q9BZE4 634 aaKnown RBP23.61■■□□□ 1.37
UPF1-207ENST00000599848 IARSP41252 1262 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms