RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MAP3K15Q6ZN16 1313 aa21.02■□□□□ 0.95
TRIM28-213ENST00000598355 KCNA3P22001 575 aa21.01■□□□□ 0.95
TRIM28-213ENST00000598355 GPR162Q16538 588 aa21.01■□□□□ 0.95
TRIM28-213ENST00000598355 CACNA1FO60840 1977 aa21■□□□□ 0.95
TRIM28-213ENST00000598355 PROSER3Q2NL68 480 aa21■□□□□ 0.95
TRIM28-213ENST00000598355 TTLL7Q6ZT98 887 aa21■□□□□ 0.95
TRIM28-213ENST00000598355 MYL6BP14649 208 aa20.99■□□□□ 0.95
TRIM28-213ENST00000598355 DPEP1P16444 411 aa20.99■□□□□ 0.95
TRIM28-213ENST00000598355 HLFQ16534 295 aa20.99■□□□□ 0.95
TRIM28-213ENST00000598355 NGEFQ8N5V2 710 aa20.99■□□□□ 0.95
TRIM28-213ENST00000598355 DDX21Q9NR30 783 aaKnown RBP eCLIP20.99■□□□□ 0.95
TRIM28-213ENST00000598355 IBTKQ9P2D0 1353 aaPredicted RBP20.98■□□□□ 0.95
TRIM28-213ENST00000598355 CCER2I3L3R5 266 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 EIF2S2P20042 333 aaKnown RBP20.98■□□□□ 0.95
TRIM28-213ENST00000598355 DUSP27Q5VZP5 1158 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 PRR5LQ6MZQ0 368 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 BICDL1Q6ZP65 573 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 FAM9BQ8IZU0 186 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 SETDB2Q96T68 719 aa20.98■□□□□ 0.95
TRIM28-213ENST00000598355 TNRC6CQ9HCJ0 1690 aaKnown RBP20.98■□□□□ 0.95
TRIM28-213ENST00000598355 A0A0G2JLW4 131 aa20.97■□□□□ 0.95
TRIM28-213ENST00000598355 GRIN3BO60391 1043 aa20.97■□□□□ 0.95
TRIM28-213ENST00000598355 HDGFL1Q5TGJ6 251 aa20.97■□□□□ 0.95
TRIM28-213ENST00000598355 CACNA1SQ13698 1873 aa20.96■□□□□ 0.95
TRIM28-213ENST00000598355 KIF6Q6ZMV9 814 aa20.96■□□□□ 0.95
TRIM28-213ENST00000598355 RIC1Q4ADV7 1423 aa20.95■□□□□ 0.95
TRIM28-213ENST00000598355 ANXA1P04083 346 aa20.95■□□□□ 0.94
TRIM28-213ENST00000598355 GIGYF2Q6Y7W6 1299 aaKnown RBP20.95■□□□□ 0.94
TRIM28-213ENST00000598355 WDR63Q8IWG1 891 aa20.95■□□□□ 0.94
TRIM28-213ENST00000598355 PELP1Q8IZL8 1130 aaKnown RBP20.95■□□□□ 0.94
TRIM28-213ENST00000598355 CHPF2Q9P2E5 772 aa20.95■□□□□ 0.94
TRIM28-213ENST00000598355 ZNF521Q96K83 1311 aa20.95■□□□□ 0.94
TRIM28-213ENST00000598355 SENP3-EIF4A1A0A087X0R7 540 aa20.94■□□□□ 0.94
TRIM28-213ENST00000598355 CNBD1Q8NA66 436 aa20.94■□□□□ 0.94
TRIM28-213ENST00000598355 C8orf58Q8NAV2 365 aa20.94■□□□□ 0.94
TRIM28-213ENST00000598355 NIP7Q9Y221 180 aaKnown RBP eCLIP20.94■□□□□ 0.94
TRIM28-213ENST00000598355 SBF1O95248 1867 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 CHRNA5P30532 468 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 NECTIN2Q92692 538 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 TSR2Q969E8 191 aaKnown RBP20.93■□□□□ 0.94
TRIM28-213ENST00000598355 BRIP1Q9BX63 1249 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 ZBTB3Q9H5J0 574 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 DBF4Q9UBU7 674 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-213ENST00000598355 UBN2Q6ZU65 1347 aa20.93■□□□□ 0.94
TRIM28-213ENST00000598355 ZNF34Q8IZ26 560 aa20.92■□□□□ 0.94
TRIM28-213ENST00000598355 PIM2Q9P1W9 311 aa20.92■□□□□ 0.94
TRIM28-213ENST00000598355 PDZRN3Q9UPQ7 1066 aa20.92■□□□□ 0.94
TRIM28-213ENST00000598355 LAMB2P55268 1798 aa20.92■□□□□ 0.94
TRIM28-213ENST00000598355 YY1P25490 414 aa20.91■□□□□ 0.94
TRIM28-213ENST00000598355 COPS6Q7L5N1 327 aa20.91■□□□□ 0.94
TRIM28-213ENST00000598355 NBPF5PQ86XG9 351 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-213ENST00000598355 TSPYL6Q8N831 410 aa20.91■□□□□ 0.94
TRIM28-213ENST00000598355 XAGE3Q8WTP9 111 aa20.91■□□□□ 0.94
TRIM28-213ENST00000598355 FANCIQ9NVI1 1328 aa20.91■□□□□ 0.94
TRIM28-213ENST00000598355 FER1L6Q2WGJ9 1857 aa20.9■□□□□ 0.94
TRIM28-213ENST00000598355 SLX4Q8IY92 1834 aa20.9■□□□□ 0.94
TRIM28-213ENST00000598355 ADCY9O60503 1353 aa20.9■□□□□ 0.94
TRIM28-213ENST00000598355 ABCC12Q96J65 1359 aa20.9■□□□□ 0.94
TRIM28-213ENST00000598355 KLRG2A4D1S0 409 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-213ENST00000598355 WWC3Q9ULE0 1092 aa20.9■□□□□ 0.94
TRIM28-213ENST00000598355 PDE6BP35913 854 aa20.89■□□□□ 0.93
TRIM28-213ENST00000598355 ST5P78524 1137 aa20.89■□□□□ 0.93
TRIM28-213ENST00000598355 HYPKQ9NX55 129 aa20.89■□□□□ 0.93
TRIM28-213ENST00000598355 BCS1LQ9Y276 419 aa20.89■□□□□ 0.93
TRIM28-213ENST00000598355 DDX60Q8IY21 1712 aaKnown RBP20.88■□□□□ 0.93
TRIM28-213ENST00000598355 NTSR2O95665 410 aa20.87■□□□□ 0.93
TRIM28-213ENST00000598355 DALRD3Q5D0E6 543 aaKnown RBP20.87■□□□□ 0.93
TRIM28-213ENST00000598355 TPTE2Q6XPS3 522 aa20.87■□□□□ 0.93
TRIM28-213ENST00000598355 C2CD5Q86YS7 1000 aa20.87■□□□□ 0.93
TRIM28-213ENST00000598355 CCDC24Q8N4L8 307 aa20.87■□□□□ 0.93
TRIM28-213ENST00000598355 CHMP4AQ9BY43 222 aa20.87■□□□□ 0.93
TRIM28-213ENST00000598355 SPINK5Q9NQ38 1064 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-213ENST00000598355 H0YIN7 160 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 ELL2O00472 640 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-213ENST00000598355 SRGNP10124 158 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 PARP10Q53GL7 1025 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 PLBD2Q8NHP8 589 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 NYXQ9GZU5 481 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 SALL2Q9Y467 1007 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-213ENST00000598355 CCDC88AQ3V6T2 1871 aa20.86■□□□□ 0.93
TRIM28-213ENST00000598355 RNF123Q5XPI4 1314 aa20.85■□□□□ 0.93
TRIM28-213ENST00000598355 GPTP24298 496 aa20.85■□□□□ 0.93
TRIM28-213ENST00000598355 AIMP1Q12904 312 aaKnown RBP20.85■□□□□ 0.93
TRIM28-213ENST00000598355 TWISTNBQ3B726 338 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-213ENST00000598355 HSP90AB3PQ58FF7 597 aa20.85■□□□□ 0.93
TRIM28-213ENST00000598355 CCDC30Q5VVM6 783 aa20.85■□□□□ 0.93
TRIM28-213ENST00000598355 DIEXFQ68CQ4 756 aaKnown RBP20.85■□□□□ 0.93
TRIM28-213ENST00000598355 DICER1Q9UPY3 1922 aaKnown RBP20.84■□□□□ 0.93
TRIM28-213ENST00000598355 TCIRG1Q13488 830 aa20.84■□□□□ 0.93
TRIM28-213ENST00000598355 CRY2Q49AN0 593 aa20.84■□□□□ 0.93
TRIM28-213ENST00000598355 SUSD4Q5VX71 490 aa20.84■□□□□ 0.93
TRIM28-213ENST00000598355 NPHP1O15259 732 aa20.83■□□□□ 0.93
TRIM28-213ENST00000598355 STYK1Q6J9G0 422 aa20.83■□□□□ 0.93
TRIM28-213ENST00000598355 TTLL6Q8N841 843 aa20.83■□□□□ 0.93
TRIM28-213ENST00000598355 ANKRD13DQ6ZTN6 518 aa20.82■□□□□ 0.92
TRIM28-213ENST00000598355 NLRP10Q86W26 655 aa20.82■□□□□ 0.92
TRIM28-213ENST00000598355 ISCA1Q9BUE6 129 aa20.82■□□□□ 0.92
TRIM28-213ENST00000598355 PHAXQ9H814 394 aaKnown RBP20.82■□□□□ 0.92
TRIM28-213ENST00000598355 ERFEQ4G0M1 354 aa20.81■□□□□ 0.92
TRIM28-213ENST00000598355 PPP1R42Q7Z4L9 355 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms