RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 VEGFAP15692 232 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-211ENST00000597968 RASSF7Q02833 373 aa18.02■□□□□ 0.48
TRIM28-211ENST00000597968 RRAGCQ9HB90 399 aa18.02■□□□□ 0.48
TRIM28-211ENST00000597968 DCTN1Q14203 1278 aa18.01■□□□□ 0.47
TRIM28-211ENST00000597968 RALBP1Q15311 655 aa18.01■□□□□ 0.47
TRIM28-211ENST00000597968 NFE2L2Q16236 605 aa18.01■□□□□ 0.47
TRIM28-211ENST00000597968 NBPF5PQ86XG9 351 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-211ENST00000597968 SMC1BQ8NDV3 1235 aa18.01■□□□□ 0.47
TRIM28-211ENST00000597968 ERVV-1B6SEH8 477 aa18■□□□□ 0.47
TRIM28-211ENST00000597968 ANKRD31Q8N7Z5 1873 aa18■□□□□ 0.47
TRIM28-211ENST00000597968 MAPK8IP3Q9UPT6 1336 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 PRAMEF22A3QJZ6 481 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 NBPF26B4DH59 902 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 C21orf2O43822 256 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 NBPF10Q6P3W6 841 aaKnown RBP17.99■□□□□ 0.47
TRIM28-211ENST00000597968 NBPF15Q8N660 670 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 DNAJC5GQ8N7S2 189 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 TAOK3Q9H2K8 898 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 BABAM1Q9NWV8 329 aa17.99■□□□□ 0.47
TRIM28-211ENST00000597968 ERBB4Q15303 1308 aa17.98■□□□□ 0.47
TRIM28-211ENST00000597968 NPR1P16066 1061 aa17.98■□□□□ 0.47
TRIM28-211ENST00000597968 PRELPP51888 382 aa17.98■□□□□ 0.47
TRIM28-211ENST00000597968 PRPF40BQ6NWY9 871 aaKnown RBP17.98■□□□□ 0.47
TRIM28-211ENST00000597968 NIP7Q9Y221 180 aaKnown RBP eCLIP17.98■□□□□ 0.47
TRIM28-211ENST00000597968 EIF4A1P60842 406 aaKnown RBP17.97■□□□□ 0.47
TRIM28-211ENST00000597968 ERFEQ4G0M1 354 aa17.97■□□□□ 0.47
TRIM28-211ENST00000597968 NYXQ9GZU5 481 aa17.97■□□□□ 0.47
TRIM28-211ENST00000597968 LAMB4A4D0S4 1761 aa17.96■□□□□ 0.47
TRIM28-211ENST00000597968 ALDH1B1P30837 517 aa17.96■□□□□ 0.47
TRIM28-211ENST00000597968 FER1L6Q2WGJ9 1857 aa17.96■□□□□ 0.47
TRIM28-211ENST00000597968 ARFGEF2Q9Y6D5 1785 aa17.96■□□□□ 0.47
TRIM28-211ENST00000597968 COL11A2P13942 1736 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-211ENST00000597968 IBTKQ9P2D0 1353 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-211ENST00000597968 PIP4K2AP48426 406 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-211ENST00000597968 LMOD3Q0VAK6 560 aa17.95■□□□□ 0.46
TRIM28-211ENST00000597968 CCDC93Q567U6 631 aa17.95■□□□□ 0.46
TRIM28-211ENST00000597968 IFFO2Q5TF58 517 aa17.95■□□□□ 0.46
TRIM28-211ENST00000597968 C7orf43Q8WVR3 580 aa17.95■□□□□ 0.46
TRIM28-211ENST00000597968 KDM3BQ7LBC6 1761 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 GRIPAP1Q4V328 841 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 RTKN2Q8IZC4 609 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 CCDC24Q8N4L8 307 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 RIC1Q4ADV7 1423 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 TIAM2Q8IVF5 1701 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 WDR90Q96KV7 1748 aa17.94■□□□□ 0.46
TRIM28-211ENST00000597968 KIF6Q6ZMV9 814 aa17.93■□□□□ 0.46
TRIM28-211ENST00000597968 KLRG1Q96E93 195 aa17.93■□□□□ 0.46
TRIM28-211ENST00000597968 MIS18AQ9NYP9 233 aa17.93■□□□□ 0.46
TRIM28-211ENST00000597968 MAP3K15Q6ZN16 1313 aa17.93■□□□□ 0.46
TRIM28-211ENST00000597968 DICER1Q9UPY3 1922 aaKnown RBP17.92■□□□□ 0.46
TRIM28-211ENST00000597968 GTF2E1P29083 439 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-211ENST00000597968 CC2D2BQ6DHV5 1058 aa17.92■□□□□ 0.46
TRIM28-211ENST00000597968 JMYQ8N9B5 988 aa17.92■□□□□ 0.46
TRIM28-211ENST00000597968 FKBP4Q02790 459 aaKnown RBP eCLIP17.91■□□□□ 0.46
TRIM28-211ENST00000597968 HLFQ16534 295 aa17.91■□□□□ 0.46
TRIM28-211ENST00000597968 CRY2Q49AN0 593 aa17.91■□□□□ 0.46
TRIM28-211ENST00000597968 DLG5Q8TDM6 1919 aa17.91■□□□□ 0.46
TRIM28-211ENST00000597968 IQCA1LA6NCM1 817 aa17.9■□□□□ 0.46
TRIM28-211ENST00000597968 POTECB2RU33 542 aa17.9■□□□□ 0.46
TRIM28-211ENST00000597968 SLX4Q8IY92 1834 aa17.9■□□□□ 0.46
TRIM28-211ENST00000597968 RIPK4P57078 832 aa17.89■□□□□ 0.45
TRIM28-211ENST00000597968 L3MBTL3Q96JM7 780 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-211ENST00000597968 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-211ENST00000597968 TSPYL4Q9UJ04 414 aa17.89■□□□□ 0.45
TRIM28-211ENST00000597968 CCDC88AQ3V6T2 1871 aa17.88■□□□□ 0.45
TRIM28-211ENST00000597968 PARP10Q53GL7 1025 aa17.88■□□□□ 0.45
TRIM28-211ENST00000597968 GIGYF2Q6Y7W6 1299 aaKnown RBP17.88■□□□□ 0.45
TRIM28-211ENST00000597968 RRP7AQ9Y3A4 280 aaKnown RBP17.88■□□□□ 0.45
TRIM28-211ENST00000597968 RNF123Q5XPI4 1314 aa17.88■□□□□ 0.45
TRIM28-211ENST00000597968 MYBBP1AQ9BQG0 1328 aaKnown RBP17.88■□□□□ 0.45
TRIM28-211ENST00000597968 HOXA10P31260 410 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-211ENST00000597968 TMPOP42166 694 aaKnown RBP17.87■□□□□ 0.45
TRIM28-211ENST00000597968 PPP1R42Q7Z4L9 355 aa17.87■□□□□ 0.45
TRIM28-211ENST00000597968 ZNF34Q8IZ26 560 aa17.87■□□□□ 0.45
TRIM28-211ENST00000597968 PSMD1Q99460 953 aa17.87■□□□□ 0.45
TRIM28-211ENST00000597968 TTLL7Q6ZT98 887 aa17.86■□□□□ 0.45
TRIM28-211ENST00000597968 THUMPD2Q9BTF0 503 aaKnown RBP17.86■□□□□ 0.45
TRIM28-211ENST00000597968 MYL6BP14649 208 aa17.85■□□□□ 0.45
TRIM28-211ENST00000597968 HSP90AB3PQ58FF7 597 aa17.85■□□□□ 0.45
TRIM28-211ENST00000597968 CHADLQ6NUI6 762 aa17.85■□□□□ 0.45
TRIM28-211ENST00000597968 FAM177BA6PVY3 158 aa17.84■□□□□ 0.45
TRIM28-211ENST00000597968 DDNO94850 711 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-211ENST00000597968 LRP10Q7Z4F1 713 aa17.84■□□□□ 0.45
TRIM28-211ENST00000597968 NGEFQ8N5V2 710 aa17.84■□□□□ 0.45
TRIM28-211ENST00000597968 RPGRQ92834 1020 aaKnown RBP17.84■□□□□ 0.45
TRIM28-211ENST00000597968 CRAMP1Q96RY5 1269 aa17.84■□□□□ 0.45
TRIM28-211ENST00000597968 PCNTO95613 3336 aa17.83■□□□□ 0.45
TRIM28-211ENST00000597968 UBN2Q6ZU65 1347 aa17.83■□□□□ 0.44
TRIM28-211ENST00000597968 FZD9O00144 591 aa17.83■□□□□ 0.44
TRIM28-211ENST00000597968 RBM17Q96I25 401 aaKnown RBP17.83■□□□□ 0.44
TRIM28-211ENST00000597968 VPS33BQ9H267 617 aa17.83■□□□□ 0.44
TRIM28-211ENST00000597968 NUP98P52948 1817 aa17.83■□□□□ 0.44
TRIM28-211ENST00000597968 SNED1Q8TER0 1413 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 ABCC12Q96J65 1359 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 SCN4AP35499 1836 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 NTSR2O95665 410 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 HOXB7P09629 217 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 IARSP41252 1262 aaKnown RBP17.82■□□□□ 0.44
TRIM28-211ENST00000597968 PDIA6Q15084 440 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 SLC10A5Q5PT55 438 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms