RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CKAP2LQ8IYA6 745 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 DLC1Q96QB1 1528 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 IGSF1Q8N6C5 1336 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 ZNF530Q6P9A1 599 aaPredicted RBP18.26■□□□□ 0.51
UPF1-204ENST00000596842 KLHDC4Q8TBB5 520 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 CYP46A1Q9Y6A2 500 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 ARHGEF10O15013 1369 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 TMEM2Q9UHN6 1383 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 OVOS2A0A0J9YW53 1432 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 PRAMEF22A3QJZ6 481 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 ZKSCAN1P17029 563 aaPredicted RBP18.25■□□□□ 0.51
UPF1-204ENST00000596842 CEBPZQ03701 1054 aaKnown RBP18.25■□□□□ 0.51
UPF1-204ENST00000596842 LARP1BQ659C4 914 aaKnown RBP18.25■□□□□ 0.51
UPF1-204ENST00000596842 OVOS2Q6IE36 1432 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 SASS6Q6UVJ0 657 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 FAM227BQ96M60 508 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 LSG1Q9H089 658 aaKnown RBP18.25■□□□□ 0.51
UPF1-204ENST00000596842 MAP3K2Q9Y2U5 619 aa18.25■□□□□ 0.51
UPF1-204ENST00000596842 RAB11FIP3O75154 756 aa18.24■□□□□ 0.51
UPF1-204ENST00000596842 TCHHQ07283 1943 aa18.24■□□□□ 0.51
UPF1-204ENST00000596842 MAP3K5Q99683 1374 aa18.24■□□□□ 0.51
UPF1-204ENST00000596842 NDUFB9Q9Y6M9 179 aa18.24■□□□□ 0.51
UPF1-204ENST00000596842 CEP170BQ9Y4F5 1589 aaPredicted RBP18.24■□□□□ 0.51
UPF1-204ENST00000596842 ATP6V1DQ9Y5K8 247 aa18.24■□□□□ 0.51
UPF1-204ENST00000596842 UBE2HP62256 183 aa18.23■□□□□ 0.51
UPF1-204ENST00000596842 RUFY2Q8WXA3 655 aa18.23■□□□□ 0.51
UPF1-204ENST00000596842 PPP6R1Q9UPN7 881 aa18.23■□□□□ 0.51
UPF1-204ENST00000596842 GLRX3O76003 335 aaKnown RBP18.23■□□□□ 0.51
UPF1-204ENST00000596842 PIP4K2AP48426 406 aaPredicted RBP18.23■□□□□ 0.51
UPF1-204ENST00000596842 ZNF771Q7L3S4 317 aaPredicted RBP18.23■□□□□ 0.51
UPF1-204ENST00000596842 FSD1Q9BTV5 496 aa18.23■□□□□ 0.51
UPF1-204ENST00000596842 COL9A3Q14050 684 aaPredicted RBP18.23■□□□□ 0.51
UPF1-204ENST00000596842 NOLC1Q14978 699 aaKnown RBP eCLIP18.23■□□□□ 0.51
UPF1-204ENST00000596842 REREQ9P2R6 1566 aa18.23■□□□□ 0.51
UPF1-204ENST00000596842 MYL6BP14649 208 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 PROSER3Q2NL68 480 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 FBXW7Q969H0 707 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 NBPF6Q5VWK0 638 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 EDC3Q96F86 508 aaKnown RBP18.22■□□□□ 0.51
UPF1-204ENST00000596842 GPATCH3Q96I76 525 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 NBPF4Q96M43 638 aa18.22■□□□□ 0.51
UPF1-204ENST00000596842 RPAP1Q9BWH6 1393 aaPredicted RBP18.21■□□□□ 0.51
UPF1-204ENST00000596842 TTC21AQ8NDW8 1320 aa18.21■□□□□ 0.51
UPF1-204ENST00000596842 G3BP1Q13283 466 aaKnown RBP eCLIP18.21■□□□□ 0.517e-7■■□□□ 11.8
UPF1-204ENST00000596842 ECHDC1Q9NTX5 307 aa18.21■□□□□ 0.51
UPF1-204ENST00000596842 RBM8AQ9Y5S9 174 aaKnown RBP18.21■□□□□ 0.51
UPF1-204ENST00000596842 ME3Q16798 604 aa18.2■□□□□ 0.5
UPF1-204ENST00000596842 HSP90B1P14625 803 aaKnown RBP18.2■□□□□ 0.5
UPF1-204ENST00000596842 KCNA6P17658 529 aa18.2■□□□□ 0.5
UPF1-204ENST00000596842 PSME1Q06323 249 aa18.2■□□□□ 0.5
UPF1-204ENST00000596842 BEND3Q5T5X7 828 aa18.2■□□□□ 0.5
UPF1-204ENST00000596842 MCM5P33992 734 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 EIF4A1P60842 406 aaKnown RBP18.19■□□□□ 0.5
UPF1-204ENST00000596842 HSP90AB4PQ58FF6 505 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 DDX11Q96FC9 970 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 HYPKQ9NX55 129 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 RIMBP3CA6NJZ7 1639 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 RIMBP3BA6NNM3 1639 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 ESCO1Q5FWF5 840 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 C1orf141Q5JVX7 400 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 FAM184AQ8NB25 1140 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 CGNQ9P2M7 1197 aaKnown RBP18.19■□□□□ 0.5
UPF1-204ENST00000596842 RIMBP3Q9UFD9 1639 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 SIRT1Q96EB6 747 aa18.19■□□□□ 0.5
UPF1-204ENST00000596842 NMIQ13287 307 aaPredicted RBP18.18■□□□□ 0.5
UPF1-204ENST00000596842 CDC37L1Q7L3B6 337 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 TTC14Q96N46 770 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 LRRC2Q9BYS8 371 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 TLR7Q9NYK1 1049 aaKnown RBP18.18■□□□□ 0.5
UPF1-204ENST00000596842 BICD2Q8TD16 824 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 MTMR6Q9Y217 621 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 LUZP1Q86V48 1076 aa18.18■□□□□ 0.5
UPF1-204ENST00000596842 KDM4AO75164 1064 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 TPCN1Q9ULQ1 816 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 DYNC1I1O14576 645 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 SLC39A6Q13433 755 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 RIC3Q7Z5B4 369 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 TAF6LQ9Y6J9 622 aa18.17■□□□□ 0.5
UPF1-204ENST00000596842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.17■□□□□ 0.5
UPF1-204ENST00000596842 HTATSF1O43719 755 aaKnown RBP18.16■□□□□ 0.5
UPF1-204ENST00000596842 DNAJC2Q99543 621 aaKnown RBP18.16■□□□□ 0.5
UPF1-204ENST00000596842 ITSN1Q15811 1721 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 PEAK1Q9H792 1746 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 LIG1P18858 919 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 POLA2Q14181 598 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 CREB3L3Q68CJ9 461 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 USP31Q70CQ4 1352 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 BLOC1S2Q6QNY1 142 aa18.16■□□□□ 0.5
UPF1-204ENST00000596842 CCDC192P0DO97 292 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 KRT85P78386 507 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 SSH2Q76I76 1423 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 CHGBP05060 677 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 NUP62CLQ9H1M0 184 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 DACT1Q9NYF0 836 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 PYCARDQ9ULZ3 195 aa18.15■□□□□ 0.5
UPF1-204ENST00000596842 CHAF1AQ13111 956 aaPredicted RBP18.14■□□□□ 0.49
UPF1-204ENST00000596842 TTC6Q86TZ1 520 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 EAF2Q96CJ1 260 aaPredicted RBP18.14■□□□□ 0.49
UPF1-204ENST00000596842 TRERF1Q96PN7 1200 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 TRIM5Q9C035 493 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms