RNA–Protein interactions for RNA: ENST00000596378.1

SRRM1-222, Transcript of serine and arginine repetitive matrix 1, human

TSL 1 (best)

Gene SRRM1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-222	ENST00000596378	COPS6	Q7L5N1	327 aa		27.59	■■■□□ 2.01
SRRM1-222	ENST00000596378	SPATA31A3	Q5VYP0	1347 aa		27.59	■■■□□ 2.01
SRRM1-222	ENST00000596378	SGSM2	O43147	1006 aa		27.59	■■■□□ 2.01
SRRM1-222	ENST00000596378	ZDHHC9	Q9Y397	364 aa		27.59	■■■□□ 2.01
SRRM1-222	ENST00000596378	USP16	Q9Y5T5	823 aa		27.59	■■■□□ 2.01
SRRM1-222	ENST00000596378	GOLGA6L22	H0YM25	854 aa		27.58	■■■□□ 2.01
SRRM1-222	ENST00000596378	SKOR2	Q2VWA4	1001 aa	Predicted RBP	27.58	■■■□□ 2.01
SRRM1-222	ENST00000596378	CWC27	Q6UX04	472 aa	Known RBP	27.58	■■■□□ 2.01
SRRM1-222	ENST00000596378	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	27.58	■■■□□ 2.01	3e-7	■■■□□ 14.8
SRRM1-222	ENST00000596378	USP42	Q9H9J4	1324 aa	Known RBP	27.58	■■■□□ 2.01
SRRM1-222	ENST00000596378	UTY	O14607	1347 aa		27.58	■■■□□ 2.01
SRRM1-222	ENST00000596378	TTC41P	Q6P2S7	1318 aa		27.57	■■■□□ 2
SRRM1-222	ENST00000596378	HSPA4	P34932	840 aa		27.57	■■■□□ 2
SRRM1-222	ENST00000596378	GLRX3	O76003	335 aa	Known RBP	27.56	■■■□□ 2
SRRM1-222	ENST00000596378	PTMS	P20962	102 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	TTC5	Q8N0Z6	440 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	DCAF5	Q96JK2	942 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	CHAMP1	Q96JM3	812 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	MYD88	Q99836	296 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	LARP1	Q6PKG0	1096 aa	Known RBP	27.56	■■■□□ 2
SRRM1-222	ENST00000596378	AACS	Q86V21	672 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	KLHDC4	Q8TBB5	520 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	SIL1	Q9H173	461 aa		27.56	■■■□□ 2
SRRM1-222	ENST00000596378	NEURL1B	A8MQ27	555 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	SASH1	O94885	1247 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	IFIT2	P09913	472 aa	Known RBP	27.55	■■■□□ 2
SRRM1-222	ENST00000596378	FOXD4L5	Q5VV16	416 aa	Predicted RBP	27.55	■■■□□ 2
SRRM1-222	ENST00000596378	GAS2L3	Q86XJ1	694 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	27.55	■■■□□ 2
SRRM1-222	ENST00000596378	JARID2	Q92833	1246 aa	Predicted RBP	27.55	■■■□□ 2
SRRM1-222	ENST00000596378	RAD50	Q92878	1312 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	LSG1	Q9H089	658 aa	Known RBP	27.55	■■■□□ 2
SRRM1-222	ENST00000596378	ECHDC1	Q9NTX5	307 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	HDAC5	Q9UQL6	1122 aa		27.55	■■■□□ 2
SRRM1-222	ENST00000596378	PKD1L3	Q7Z443	1732 aa		27.54	■■■□□ 2
SRRM1-222	ENST00000596378	MCM2	P49736	904 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	ERC1	Q8IUD2	1116 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	DDX49	Q9Y6V7	483 aa	Known RBP	27.53	■■■□□ 2
SRRM1-222	ENST00000596378	MRC1	P22897	1456 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	NEXN	Q0ZGT2	675 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	EPHA10	Q5JZY3	1008 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	LRP10	Q7Z4F1	713 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	IL17RA	Q96F46	866 aa		27.53	■■■□□ 2
SRRM1-222	ENST00000596378	XIRP1	Q702N8	1843 aa	Known RBP	27.53	■■■□□ 2
SRRM1-222	ENST00000596378	SNRPA1	P09661	255 aa	Known RBP	27.52	■■■□□ 2
SRRM1-222	ENST00000596378	GCKR	Q14397	625 aa		27.52	■■■□□ 2
SRRM1-222	ENST00000596378	GRPEL1	Q9HAV7	217 aa		27.52	■■■□□ 2
SRRM1-222	ENST00000596378	ABCC6	O95255	1503 aa		27.52	■■■□□ 2
SRRM1-222	ENST00000596378	METTL22	Q9BUU2	404 aa	Predicted RBP	27.52	■■■□□ 2
SRRM1-222	ENST00000596378	MRE11	P49959	708 aa		27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	CUL4A	Q13619	759 aa		27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	BRINP3	Q76B58	766 aa		27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	EAF2	Q96CJ1	260 aa	Predicted RBP	27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	CCDC8	Q9H0W5	538 aa	Predicted RBP	27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	CABP4	P57796	275 aa		27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	G3BP1	Q13283	466 aa	Known RBP eCLIP	27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	TLR7	Q9NYK1	1049 aa	Known RBP	27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	SNX14	Q9Y5W7	946 aa		27.51	■■□□□ 1.99
SRRM1-222	ENST00000596378	ANKRD13D	Q6ZTN6	518 aa		27.5	■■□□□ 1.99
SRRM1-222	ENST00000596378	RASEF	Q8IZ41	740 aa		27.5	■■□□□ 1.99
SRRM1-222	ENST00000596378	FMNL2	Q96PY5	1086 aa		27.5	■■□□□ 1.99
SRRM1-222	ENST00000596378	DIAPH3	Q9NSV4	1193 aa		27.5	■■□□□ 1.99
SRRM1-222	ENST00000596378	LMBRD1	Q9NUN5	540 aa		27.5	■■□□□ 1.99
SRRM1-222	ENST00000596378	CPD	O75976	1380 aa		27.49	■■□□□ 1.99
SRRM1-222	ENST00000596378	KLHL40	Q2TBA0	621 aa		27.49	■■□□□ 1.99
SRRM1-222	ENST00000596378	GPATCH3	Q96I76	525 aa		27.49	■■□□□ 1.99
SRRM1-222	ENST00000596378	EPB41L2	O43491	1005 aa	Known RBP	27.49	■■□□□ 1.99
SRRM1-222	ENST00000596378	KIAA1211	Q6ZU35	1233 aa		27.48	■■□□□ 1.99
SRRM1-222	ENST00000596378	PTH1R	Q03431	593 aa		27.46	■■□□□ 1.99
SRRM1-222	ENST00000596378	AFDN	P55196	1824 aa	Known RBP	27.46	■■□□□ 1.99
SRRM1-222	ENST00000596378	ATP5J2-PTCD1	G3V325	749 aa		27.46	■■□□□ 1.99
SRRM1-222	ENST00000596378	PTCD1	O75127	700 aa	Known RBP	27.46	■■□□□ 1.99
SRRM1-222	ENST00000596378	PRDM11	Q9NQV5	511 aa		27.46	■■□□□ 1.99
SRRM1-222	ENST00000596378	GLI3	P10071	1580 aa		27.45	■■□□□ 1.99
SRRM1-222	ENST00000596378	PRPF40A	O75400	957 aa	Known RBP	27.45	■■□□□ 1.99
SRRM1-222	ENST00000596378	NCL	P19338	710 aa	Known RBP	27.45	■■□□□ 1.99
SRRM1-222	ENST00000596378	LARP6	Q9BRS8	491 aa	Known RBP	27.45	■■□□□ 1.99
SRRM1-222	ENST00000596378	ARFGEF2	Q9Y6D5	1785 aa		27.44	■■□□□ 1.98
SRRM1-222	ENST00000596378	CPA1	P15085	419 aa		27.44	■■□□□ 1.98
SRRM1-222	ENST00000596378	TOM1L2	Q6ZVM7	507 aa		27.44	■■□□□ 1.98
SRRM1-222	ENST00000596378	UBE3B	Q7Z3V4	1068 aa		27.44	■■□□□ 1.98
SRRM1-222	ENST00000596378	EVI5L	Q96CN4	794 aa		27.43	■■□□□ 1.98
SRRM1-222	ENST00000596378	INTS4	Q96HW7	963 aa	Known RBP	27.43	■■□□□ 1.98
SRRM1-222	ENST00000596378	CAVIN1	Q6NZI2	390 aa	Known RBP	27.42	■■□□□ 1.98
SRRM1-222	ENST00000596378	BOLA2	Q9H3K6	86 aa		27.42	■■□□□ 1.98
SRRM1-222	ENST00000596378	BRD1	O95696	1058 aa		27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	RUFY2	Q8WXA3	655 aa		27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	FAM227B	Q96M60	508 aa		27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	ISY1	Q9ULR0	285 aa	Known RBP	27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	WDR17	Q8IZU2	1322 aa		27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	TTC14	Q96N46	770 aa		27.41	■■□□□ 1.98
SRRM1-222	ENST00000596378	AK2	P54819	239 aa		27.4	■■□□□ 1.98
SRRM1-222	ENST00000596378	PRPF40B	Q6NWY9	871 aa	Known RBP	27.4	■■□□□ 1.98
SRRM1-222	ENST00000596378	GPT2	Q8TD30	523 aa		27.4	■■□□□ 1.98
SRRM1-222	ENST00000596378	PLEKHG2	Q9H7P9	1386 aa		27.39	■■□□□ 1.98
SRRM1-222	ENST00000596378	LAMB4	A4D0S4	1761 aa		27.39	■■□□□ 1.98
SRRM1-222	ENST00000596378	PARP4	Q9UKK3	1724 aa	Known RBP	27.39	■■□□□ 1.98
SRRM1-222	ENST00000596378	FAM43A	Q8N2R8	423 aa		27.39	■■□□□ 1.98
SRRM1-222	ENST00000596378	ZCRB1	Q8TBF4	217 aa	Known RBP	27.39	■■□□□ 1.98
SRRM1-222	ENST00000596378	NBPF26	B4DH59	902 aa		27.39	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 544.1 ms