RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 EIF2S2P20042 333 aaKnown RBP21.1■□□□□ 0.97
TRIM28-206ENST00000595974 KCNA3P22001 575 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 CCDC27Q2M243 656 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 KIF6Q6ZMV9 814 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 CNBD1Q8NA66 436 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 MBIPQ9NS73 344 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 PIM2Q9P1W9 311 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 BCS1LQ9Y276 419 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 KRT24Q2M2I5 525 aa21.09■□□□□ 0.97
TRIM28-206ENST00000595974 NCBP3Q53F19 620 aaKnown RBP21.09■□□□□ 0.97
TRIM28-206ENST00000595974 PRR5LQ6MZQ0 368 aa21.09■□□□□ 0.97
TRIM28-206ENST00000595974 NGEFQ8N5V2 710 aa21.09■□□□□ 0.97
TRIM28-206ENST00000595974 ANKRD36CQ5JPF3 1778 aa21.09■□□□□ 0.97
TRIM28-206ENST00000595974 ATP10DQ9P241 1426 aa21.09■□□□□ 0.97
TRIM28-206ENST00000595974 CHRNA5P30532 468 aa21.08■□□□□ 0.97
TRIM28-206ENST00000595974 PDIA6Q15084 440 aa21.08■□□□□ 0.97
TRIM28-206ENST00000595974 LRP10Q7Z4F1 713 aa21.08■□□□□ 0.97
TRIM28-206ENST00000595974 NPHP1O15259 732 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 ST5P78524 1137 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 HLFQ16534 295 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 TTLL7Q6ZT98 887 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 BRIP1Q9BX63 1249 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 PDZRN3Q9UPQ7 1066 aa21.07■□□□□ 0.96
TRIM28-206ENST00000595974 NIP7Q9Y221 180 aaKnown RBP eCLIP21.07■□□□□ 0.96
TRIM28-206ENST00000595974 DALRD3Q5D0E6 543 aaKnown RBP21.06■□□□□ 0.96
TRIM28-206ENST00000595974 NBPF5PQ86XG9 351 aaPredicted RBP21.06■□□□□ 0.96
TRIM28-206ENST00000595974 ARFGEF2Q9Y6D5 1785 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 PDE6BP35913 854 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 PROSER3Q2NL68 480 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 HDGFL1Q5TGJ6 251 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 WWC1Q8IX03 1113 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 DDX21Q9NR30 783 aaKnown RBP eCLIP21.05■□□□□ 0.96
TRIM28-206ENST00000595974 CACNA1SQ13698 1873 aa21.05■□□□□ 0.96
TRIM28-206ENST00000595974 H0YIN7 160 aa21.04■□□□□ 0.96
TRIM28-206ENST00000595974 DUSP27Q5VZP5 1158 aa21.04■□□□□ 0.96
TRIM28-206ENST00000595974 C2CD5Q86YS7 1000 aa21.04■□□□□ 0.96
TRIM28-206ENST00000595974 NECTIN2Q92692 538 aa21.04■□□□□ 0.96
TRIM28-206ENST00000595974 ZBTB3Q9H5J0 574 aa21.04■□□□□ 0.96
TRIM28-206ENST00000595974 IBTKQ9P2D0 1353 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-206ENST00000595974 ANXA1P04083 346 aa21.03■□□□□ 0.96
TRIM28-206ENST00000595974 GIGYF2Q6Y7W6 1299 aaKnown RBP21.03■□□□□ 0.96
TRIM28-206ENST00000595974 IL16Q14005 1332 aa21.03■□□□□ 0.96
TRIM28-206ENST00000595974 TPTE2Q6XPS3 522 aa21.02■□□□□ 0.96
TRIM28-206ENST00000595974 FAM9BQ8IZU0 186 aa21.02■□□□□ 0.96
TRIM28-206ENST00000595974 CCDC24Q8N4L8 307 aa21.02■□□□□ 0.96
TRIM28-206ENST00000595974 ZNF784Q8NCA9 323 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-206ENST00000595974 CHPF2Q9P2E5 772 aa21.02■□□□□ 0.96
TRIM28-206ENST00000595974 ADCY9O60503 1353 aa21.01■□□□□ 0.95
TRIM28-206ENST00000595974 NYXQ9GZU5 481 aa21.01■□□□□ 0.95
TRIM28-206ENST00000595974 DBF4Q9UBU7 674 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-206ENST00000595974 SBF1O95248 1867 aa21.01■□□□□ 0.95
TRIM28-206ENST00000595974 TTLL6Q8N841 843 aa21■□□□□ 0.95
TRIM28-206ENST00000595974 XAGE3Q8WTP9 111 aa21■□□□□ 0.95
TRIM28-206ENST00000595974 TNRC6CQ9HCJ0 1690 aaKnown RBP20.99■□□□□ 0.95
TRIM28-206ENST00000595974 RIC1Q4ADV7 1423 aa20.99■□□□□ 0.95
TRIM28-206ENST00000595974 SENP3-EIF4A1A0A087X0R7 540 aa20.99■□□□□ 0.95
TRIM28-206ENST00000595974 COPS6Q7L5N1 327 aa20.99■□□□□ 0.95
TRIM28-206ENST00000595974 CHMP4AQ9BY43 222 aa20.99■□□□□ 0.95
TRIM28-206ENST00000595974 UBN2Q6ZU65 1347 aa20.99■□□□□ 0.95
TRIM28-206ENST00000595974 FAM177BA6PVY3 158 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 GPTP24298 496 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 AIMP1Q12904 312 aaKnown RBP20.98■□□□□ 0.95
TRIM28-206ENST00000595974 PARP10Q53GL7 1025 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 ARHGAP27Q6ZUM4 889 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 ZNF34Q8IZ26 560 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 HYPKQ9NX55 129 aa20.98■□□□□ 0.95
TRIM28-206ENST00000595974 SLX4Q8IY92 1834 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 SRGNP10124 158 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 GTF2E1P29083 439 aaPredicted RBP20.97■□□□□ 0.95
TRIM28-206ENST00000595974 HSP90AB3PQ58FF7 597 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 STYK1Q6J9G0 422 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 CACNA1FO60840 1977 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 ABCC12Q96J65 1359 aa20.97■□□□□ 0.95
TRIM28-206ENST00000595974 WDR63Q8IWG1 891 aa20.96■□□□□ 0.95
TRIM28-206ENST00000595974 C8orf58Q8NAV2 365 aa20.96■□□□□ 0.95
TRIM28-206ENST00000595974 TSR2Q969E8 191 aaKnown RBP20.96■□□□□ 0.95
TRIM28-206ENST00000595974 ZNF622Q969S3 477 aaKnown RBP eCLIP20.96■□□□□ 0.95
TRIM28-206ENST00000595974 FER1L6Q2WGJ9 1857 aa20.96■□□□□ 0.95
TRIM28-206ENST00000595974 CCDC88AQ3V6T2 1871 aa20.95■□□□□ 0.94
TRIM28-206ENST00000595974 KLRG2A4D1S0 409 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-206ENST00000595974 ELL2O00472 640 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-206ENST00000595974 CNKSR1Q969H4 720 aa20.95■□□□□ 0.94
TRIM28-206ENST00000595974 MASTLQ96GX5 879 aa20.95■□□□□ 0.94
TRIM28-206ENST00000595974 NTSR2O95665 410 aa20.94■□□□□ 0.94
TRIM28-206ENST00000595974 SUSD4Q5VX71 490 aa20.94■□□□□ 0.94
TRIM28-206ENST00000595974 PPP1R42Q7Z4L9 355 aa20.94■□□□□ 0.94
TRIM28-206ENST00000595974 PLBD2Q8NHP8 589 aa20.94■□□□□ 0.94
TRIM28-206ENST00000595974 RNF123Q5XPI4 1314 aa20.94■□□□□ 0.94
TRIM28-206ENST00000595974 NPR1P16066 1061 aa20.93■□□□□ 0.94
TRIM28-206ENST00000595974 CCDC30Q5VVM6 783 aa20.93■□□□□ 0.94
TRIM28-206ENST00000595974 NUTM1Q86Y26 1132 aa20.93■□□□□ 0.94
TRIM28-206ENST00000595974 SALL2Q9Y467 1007 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-206ENST00000595974 TCIRG1Q13488 830 aa20.92■□□□□ 0.94
TRIM28-206ENST00000595974 TSPYL6Q8N831 410 aa20.92■□□□□ 0.94
TRIM28-206ENST00000595974 FANCIQ9NVI1 1328 aa20.92■□□□□ 0.94
TRIM28-206ENST00000595974 LAMB2P55268 1798 aa20.92■□□□□ 0.94
TRIM28-206ENST00000595974 CCER2I3L3R5 266 aa20.91■□□□□ 0.94
TRIM28-206ENST00000595974 ERFEQ4G0M1 354 aa20.91■□□□□ 0.94
TRIM28-206ENST00000595974 PRPF40BQ6NWY9 871 aaKnown RBP20.91■□□□□ 0.94
TRIM28-206ENST00000595974 ANKRD13DQ6ZTN6 518 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms