RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NBPF5PQ86XG9 351 aaPredicted RBP19.96■□□□□ 0.79
TRIM28-203ENST00000593582 ERBB4Q15303 1308 aa19.96■□□□□ 0.79
TRIM28-203ENST00000593582 ATP10DQ9P241 1426 aa19.95■□□□□ 0.78
TRIM28-203ENST00000593582 ANP32CO43423 234 aa19.95■□□□□ 0.78
TRIM28-203ENST00000593582 CCDC24Q8N4L8 307 aa19.95■□□□□ 0.78
TRIM28-203ENST00000593582 TTLL6Q8N841 843 aa19.95■□□□□ 0.78
TRIM28-203ENST00000593582 NIP7Q9Y221 180 aaKnown RBP eCLIP19.95■□□□□ 0.78
TRIM28-203ENST00000593582 ADCY9O60503 1353 aa19.95■□□□□ 0.78
TRIM28-203ENST00000593582 ERVV-1B6SEH8 477 aa19.94■□□□□ 0.78
TRIM28-203ENST00000593582 APAF1O14727 1248 aa19.94■□□□□ 0.78
TRIM28-203ENST00000593582 EIF2S2P20042 333 aaKnown RBP19.94■□□□□ 0.78
TRIM28-203ENST00000593582 HLFQ16534 295 aa19.94■□□□□ 0.78
TRIM28-203ENST00000593582 TPTE2Q6XPS3 522 aa19.92■□□□□ 0.78
TRIM28-203ENST00000593582 TTLL7Q6ZT98 887 aa19.92■□□□□ 0.78
TRIM28-203ENST00000593582 GPBP1L1Q9HC44 474 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-203ENST00000593582 MAP3K15Q6ZN16 1313 aa19.92■□□□□ 0.78
TRIM28-203ENST00000593582 ARFGEF1Q9Y6D6 1849 aa19.92■□□□□ 0.78
TRIM28-203ENST00000593582 CALD1Q05682 793 aaKnown RBP19.91■□□□□ 0.78
TRIM28-203ENST00000593582 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
TRIM28-203ENST00000593582 ZNF622Q969S3 477 aaKnown RBP eCLIP19.91■□□□□ 0.78
TRIM28-203ENST00000593582 CFAP44Q96MT7 982 aa19.91■□□□□ 0.78
TRIM28-203ENST00000593582 ZNF526Q8TF50 670 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-203ENST00000593582 FAM177BA6PVY3 158 aa19.89■□□□□ 0.77
TRIM28-203ENST00000593582 GTF2E1P29083 439 aaPredicted RBP19.89■□□□□ 0.77
TRIM28-203ENST00000593582 PDIA6Q15084 440 aa19.89■□□□□ 0.77
TRIM28-203ENST00000593582 ZBTB3Q9H5J0 574 aa19.89■□□□□ 0.77
TRIM28-203ENST00000593582 KRT24Q2M2I5 525 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 C9orf131Q5VYM1 1079 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 NECTIN2Q92692 538 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 NYXQ9GZU5 481 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 MRS2Q9HD23 443 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 DLEC1Q9Y238 1755 aa19.88■□□□□ 0.77
TRIM28-203ENST00000593582 HOXB7P09629 217 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 SRGNP10124 158 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 PROSER3Q2NL68 480 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 STYK1Q6J9G0 422 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 LRP10Q7Z4F1 713 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 CNKSR1Q969H4 720 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 IFT57Q9NWB7 429 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 ANKRD31Q8N7Z5 1873 aa19.87■□□□□ 0.77
TRIM28-203ENST00000593582 ANXA1P04083 346 aa19.86■□□□□ 0.77
TRIM28-203ENST00000593582 C1QTNF8P60827 252 aa19.86■□□□□ 0.77
TRIM28-203ENST00000593582 GNAI1P63096 354 aa19.86■□□□□ 0.77
TRIM28-203ENST00000593582 MASTLQ96GX5 879 aa19.86■□□□□ 0.77
TRIM28-203ENST00000593582 MBIPQ9NS73 344 aa19.86■□□□□ 0.77
TRIM28-203ENST00000593582 ZNF853P0CG23 659 aa19.85■□□□□ 0.77
TRIM28-203ENST00000593582 GPTP24298 496 aa19.85■□□□□ 0.77
TRIM28-203ENST00000593582 HDGFL1Q5TGJ6 251 aa19.85■□□□□ 0.77
TRIM28-203ENST00000593582 GIGYF2Q6Y7W6 1299 aaKnown RBP19.85■□□□□ 0.77
TRIM28-203ENST00000593582 DDX21Q9NR30 783 aaKnown RBP eCLIP19.85■□□□□ 0.77
TRIM28-203ENST00000593582 RNF181Q9P0P0 153 aa19.85■□□□□ 0.77
TRIM28-203ENST00000593582 KLRG2A4D1S0 409 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-203ENST00000593582 NPR1P16066 1061 aa19.84■□□□□ 0.77
TRIM28-203ENST00000593582 C21orf2O43822 256 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 RASSF7Q02833 373 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 AIMP1Q12904 312 aaKnown RBP19.83■□□□□ 0.77
TRIM28-203ENST00000593582 DUSP27Q5VZP5 1158 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 PRPF40BQ6NWY9 871 aaKnown RBP19.83■□□□□ 0.77
TRIM28-203ENST00000593582 COPS6Q7L5N1 327 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 ZNF34Q8IZ26 560 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 XAGE3Q8WTP9 111 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 CHPF2Q9P2E5 772 aa19.83■□□□□ 0.77
TRIM28-203ENST00000593582 ZNF219Q9P2Y4 722 aaPredicted RBP19.83■□□□□ 0.77
TRIM28-203ENST00000593582 COL11A2P13942 1736 aaPredicted RBP19.82■□□□□ 0.76
TRIM28-203ENST00000593582 UBN2Q6ZU65 1347 aa19.82■□□□□ 0.76
TRIM28-203ENST00000593582 LMNB1P20700 586 aa19.82■□□□□ 0.76
TRIM28-203ENST00000593582 NUTM1Q86Y26 1132 aa19.82■□□□□ 0.76
TRIM28-203ENST00000593582 IBTKQ9P2D0 1353 aaPredicted RBP19.82■□□□□ 0.76
TRIM28-203ENST00000593582 PARP10Q53GL7 1025 aa19.81■□□□□ 0.76
TRIM28-203ENST00000593582 SOGA3Q5TF21 947 aa19.81■□□□□ 0.76
TRIM28-203ENST00000593582 PPP1R42Q7Z4L9 355 aa19.81■□□□□ 0.76
TRIM28-203ENST00000593582 DBF4Q9UBU7 674 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-203ENST00000593582 NUP98P52948 1817 aa19.81■□□□□ 0.76
TRIM28-203ENST00000593582 CCDC27Q2M243 656 aa19.8■□□□□ 0.76
TRIM28-203ENST00000593582 ERFEQ4G0M1 354 aa19.8■□□□□ 0.76
TRIM28-203ENST00000593582 HSP90AB3PQ58FF7 597 aa19.8■□□□□ 0.76
TRIM28-203ENST00000593582 SUSD4Q5VX71 490 aa19.8■□□□□ 0.76
TRIM28-203ENST00000593582 NFKBIEO00221 500 aa19.79■□□□□ 0.76
TRIM28-203ENST00000593582 ALDH1B1P30837 517 aa19.79■□□□□ 0.76
TRIM28-203ENST00000593582 HYPKQ9NX55 129 aa19.79■□□□□ 0.76
TRIM28-203ENST00000593582 ABCC12Q96J65 1359 aa19.79■□□□□ 0.76
TRIM28-203ENST00000593582 ZC3H4Q9UPT8 1303 aaKnown RBP19.78■□□□□ 0.76
TRIM28-203ENST00000593582 UTP14AQ9BVJ6 771 aaKnown RBP19.78■□□□□ 0.76
TRIM28-203ENST00000593582 KDM2BQ8NHM5 1336 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 SENP3-EIF4A1A0A087X0R7 540 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 ELL2O00472 640 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-203ENST00000593582 NTSR2O95665 410 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 CRY2Q49AN0 593 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 NCBP3Q53F19 620 aaKnown RBP19.77■□□□□ 0.76
TRIM28-203ENST00000593582 WWC1Q8IX03 1113 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 CHMP4AQ9BY43 222 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 TAOK3Q9H2K8 898 aa19.77■□□□□ 0.76
TRIM28-203ENST00000593582 PRELPP51888 382 aa19.76■□□□□ 0.75
TRIM28-203ENST00000593582 TCIRG1Q13488 830 aa19.76■□□□□ 0.75
TRIM28-203ENST00000593582 ANKRD13DQ6ZTN6 518 aa19.76■□□□□ 0.75
TRIM28-203ENST00000593582 RPGRQ92834 1020 aaKnown RBP19.76■□□□□ 0.75
TRIM28-203ENST00000593582 RIC1Q4ADV7 1423 aa19.76■□□□□ 0.75
TRIM28-203ENST00000593582 SLX4Q8IY92 1834 aa19.75■□□□□ 0.75
TRIM28-203ENST00000593582 KIF3CO14782 793 aa19.75■□□□□ 0.75
TRIM28-203ENST00000593582 C8orf58Q8NAV2 365 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms