RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 JAKMIP1Q96N16 626 aaKnown RBP15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 RNF41Q9H4P4 317 aaPredicted RBP15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 PLEKHH1Q9ULM0 1364 aa15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 CCDC181Q5TID7 509 aa15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 UBE3BQ7Z3V4 1068 aa15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 PAF1Q8N7H5 531 aa15.55■□□□□ 0.08
SMARCA4-216ENST00000591545 TTF1Q15361 905 aaPredicted RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 PUS7Q96PZ0 661 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 LRRFIP2Q9Y608 721 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 PZPP20742 1482 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 ZRSR2Q15696 482 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 IQCA1Q86XH1 822 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 PARP3Q9Y6F1 533 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 CEBPZQ03701 1054 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 DISP3Q9P2K9 1392 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 USP8P40818 1118 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 RBM10P98175 930 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 NYXQ9GZU5 481 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 HDAC9Q9UKV0 1011 aa15.54■□□□□ 0.08
SMARCA4-216ENST00000591545 DEF6Q9H4E7 631 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 RARSP54136 660 aaKnown RBP15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 ANKRD18AQ8IVF6 992 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 FEZ1Q99689 392 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 CABP5Q9NP86 173 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 FLT4P35916 1363 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 CCDC196A0A1B0GTZ2 297 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 HLA-DOAP06340 250 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 BTG4Q9NY30 223 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 PI4KAP2A4QPH2 592 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 MAP3K11Q16584 847 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 CCDC96Q2M329 555 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 PI4KAP1Q8N8J0 262 aa15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 UPF3BQ9BZI7 483 aaKnown RBP15.53■□□□□ 0.08
SMARCA4-216ENST00000591545 TAF3Q5VWG9 929 aa15.52■□□□□ 0.08
SMARCA4-216ENST00000591545 CTCFLQ8NI51 663 aaPredicted RBP15.52■□□□□ 0.08
SMARCA4-216ENST00000591545 GBP3Q9H0R5 595 aa15.52■□□□□ 0.08
SMARCA4-216ENST00000591545 CCDC8Q9H0W5 538 aaPredicted RBP15.52■□□□□ 0.08
SMARCA4-216ENST00000591545 TPTE2Q6XPS3 522 aa15.52■□□□□ 0.07
SMARCA4-216ENST00000591545 STK32BQ9NY57 414 aa15.52■□□□□ 0.07
SMARCA4-216ENST00000591545 SSBP05455 408 aaKnown RBP eCLIP15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 IL16Q14005 1332 aa15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 GSTO1P78417 241 aa15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 NIP7Q9Y221 180 aaKnown RBP eCLIP15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 RANBP6O60518 1105 aaKnown RBP15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 UQCRFS1P1P0C7P4 283 aa15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 OGFOD1Q8N543 542 aa15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 PDCL3Q9H2J4 239 aa15.51■□□□□ 0.07
SMARCA4-216ENST00000591545 PIBF1Q8WXW3 757 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 CUL5Q93034 780 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 SHANK2Q9UPX8 1470 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 SIRT1Q96EB6 747 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 DCAF5Q96JK2 942 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 MBIPQ9NS73 344 aa15.5■□□□□ 0.07
SMARCA4-216ENST00000591545 FAM83GA6ND36 823 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 CEP131Q9UPN4 1083 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 PCDH11XQ9BZA7 1347 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 PCDH11YQ9BZA8 1340 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 SLC39A6Q13433 755 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 XAGE3Q8WTP9 111 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 GCC2Q8IWJ2 1684 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 NPATQ14207 1427 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 EHMT1Q9H9B1 1298 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 CLEC11AQ9Y240 323 aa15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 ZGPATQ8N5A5 531 aaKnown RBP15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 UTP14AQ9BVJ6 771 aaKnown RBP15.49■□□□□ 0.07
SMARCA4-216ENST00000591545 ZNF213O14771 459 aa15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 EIF4A2Q14240 407 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 DZIP3Q86Y13 1208 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 JDP2Q8WYK2 163 aa15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 SH2B1Q9NRF2 756 aaPredicted RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 FBLN1P23142 703 aa15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 COPS6Q7L5N1 327 aa15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 SCAND2PQ9GZW5 306 aaPredicted RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 C16orf71Q8IYS4 520 aaPredicted RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 PRAG1Q86YV5 1406 aa15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 NKTRP30414 1462 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-216ENST00000591545 UBXN4Q92575 508 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 CCDC183Q5T5S1 534 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 HMGB1P09429 215 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 ZSCAN12O43309 604 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 PPP4R3AQ6IN85 833 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 IP6K1Q92551 441 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 EPB41L2O43491 1005 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 PDE4BQ07343 736 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 ECHDC1Q9NTX5 307 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 PODXL2Q9NZ53 605 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 SLAIN2Q9P270 581 aa15.47■□□□□ 0.07
SMARCA4-216ENST00000591545 ANXA1P04083 346 aa15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 NF2P35240 595 aa15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 SCLT1Q96NL6 688 aa15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 ADGRL2O95490 1459 aa15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 MATR3P43243 847 aaKnown RBP eCLIP15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 ANO10Q9NW15 660 aa15.46■□□□□ 0.07
SMARCA4-216ENST00000591545 CCDC148Q8NFR7 591 aa15.46■□□□□ 0.06
SMARCA4-216ENST00000591545 NEO1Q92859 1461 aa15.45■□□□□ 0.06
SMARCA4-216ENST00000591545 YTHDC2Q9H6S0 1430 aaKnown RBP15.45■□□□□ 0.06
SMARCA4-216ENST00000591545 SMARCA5O60264 1052 aaPredicted RBP15.45■□□□□ 0.06
SMARCA4-216ENST00000591545 NEFHP12036 1026 aa15.45■□□□□ 0.06
SMARCA4-216ENST00000591545 TRIM21P19474 475 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms