RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	PTCH1	Q13635	1447 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	ALDH1A1	P00352	501 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349		Q6ZNB5	142 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	C8orf37	Q96NL8	207 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	PRAM1	Q96QH2	718 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	LRPPRC	P42704	1394 aa	Known RBP	11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	ASXL1	Q8IXJ9	1541 aa		11.86	□□□□□ -0.51
DNMT1-219	ENST00000589349	FOXO3	O43524	673 aa		11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	POTEA	Q6S8J7	498 aa		11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	TRMT44	Q8IYL2	757 aa	Known RBP	11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	RGS17	Q9UGC6	210 aa	Predicted RBP	11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	TLL2	Q9Y6L7	1015 aa		11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.85	□□□□□ -0.51
DNMT1-219	ENST00000589349	C1orf167	Q5SNV9	1468 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	PLEKHH1	Q9ULM0	1364 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	NEUROD1	Q13562	356 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	ERFE	Q4G0M1	354 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	ZNF772	Q68DY9	489 aa	Predicted RBP	11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	WASF2	Q9Y6W5	498 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	PIK3C2G	O75747	1445 aa		11.84	□□□□□ -0.51
DNMT1-219	ENST00000589349	ZBBX	A8MT70	800 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349		J3QL48	77 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	SMPD1	P17405	629 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	SLC10A4	Q96EP9	437 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	NGLY1	Q96IV0	654 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	CDK15	Q96Q40	435 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	NALCN	Q8IZF0	1738 aa		11.83	□□□□□ -0.52
DNMT1-219	ENST00000589349	ABCC11	Q96J66	1382 aa		11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	ADAM32	Q8TC27	787 aa		11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	CDV3	Q9UKY7	258 aa	Known RBP	11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	TBC1D2B	Q9UPU7	963 aa		11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	MAP4K5	Q9Y4K4	846 aa		11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	NPHP3	Q7Z494	1330 aa		11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	COL16A1	Q07092	1604 aa	Predicted RBP	11.82	□□□□□ -0.52
DNMT1-219	ENST00000589349	ARID5B	Q14865	1188 aa		11.81	□□□□□ -0.52
DNMT1-219	ENST00000589349	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.81	□□□□□ -0.52
DNMT1-219	ENST00000589349	ADH1C	P00326	375 aa		11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	PSME1	Q06323	249 aa		11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	ZNF592	Q92610	1267 aa		11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	OCSTAMP	Q9BR26	566 aa		11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	AFF2	P51816	1311 aa		11.8	□□□□□ -0.52
DNMT1-219	ENST00000589349	GPR37L1	O60883	481 aa		11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	RXRB	P28702	533 aa		11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	NR1H3	Q13133	447 aa		11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	VASH1	Q7L8A9	365 aa	Predicted RBP	11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	PMFBP1	Q8TBY8	1022 aa		11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	SETD1A	O15047	1707 aa	Known RBP	11.79	□□□□□ -0.52
DNMT1-219	ENST00000589349	MYOM2	P54296	1465 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	AVP	P01185	164 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	FBXO45	P0C2W1	286 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	KRT28	Q7Z3Y7	464 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	SIRT1	Q96EB6	747 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	GDPD2	Q9HCC8	539 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	LRP6	O75581	1613 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	PNPLA6	Q8IY17	1366 aa		11.78	□□□□□ -0.52
DNMT1-219	ENST00000589349	IFT172	Q9UG01	1749 aa		11.77	□□□□□ -0.52
DNMT1-219	ENST00000589349	RAD21	O60216	631 aa		11.77	□□□□□ -0.53
DNMT1-219	ENST00000589349	NR5A1	Q13285	461 aa		11.77	□□□□□ -0.53
DNMT1-219	ENST00000589349	DZIP3	Q86Y13	1208 aa	Known RBP	11.77	□□□□□ -0.53
DNMT1-219	ENST00000589349	QTRT2	Q9H974	415 aa	Known RBP	11.77	□□□□□ -0.53
DNMT1-219	ENST00000589349	SOS2	Q07890	1332 aa	Predicted RBP	11.77	□□□□□ -0.53
DNMT1-219	ENST00000589349	ABL2	P42684	1182 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	CTC1	Q2NKJ3	1217 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	NBPF20	Q3BBV1	942 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	TRAF7	Q6Q0C0	670 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	NGDN	Q8NEJ9	315 aa	Known RBP	11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	SIN3A	Q96ST3	1273 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	USP21	Q9UK80	565 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	TECPR2	O15040	1411 aa		11.76	□□□□□ -0.53
DNMT1-219	ENST00000589349	NNT	Q13423	1086 aa		11.75	□□□□□ -0.53
DNMT1-219	ENST00000589349	WWC1	Q8IX03	1113 aa		11.75	□□□□□ -0.53
DNMT1-219	ENST00000589349	COG6	Q9Y2V7	657 aa		11.75	□□□□□ -0.53
DNMT1-219	ENST00000589349	SHPRH	Q149N8	1683 aa		11.75	□□□□□ -0.53
DNMT1-219	ENST00000589349	FSHR	P23945	695 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	MCCD1	P59942	119 aa	Predicted RBP	11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	MYT1	Q01538	1121 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	HPS1	Q92902	700 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	NRXN1	Q9ULB1	1477 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	CDC42BPG	Q6DT37	1551 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	LAMC1	P11047	1609 aa		11.74	□□□□□ -0.53
DNMT1-219	ENST00000589349	GRM5	P41594	1212 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	WASHC4	Q2M389	1173 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	NHSL1	Q5SYE7	1610 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	PRAG1	Q86YV5	1406 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	CRIPAK	Q8N1N5	446 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	KCTD15	Q96SI1	283 aa	Predicted RBP	11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	CCDC9	Q9Y3X0	531 aa	Known RBP	11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	PCDHB9	Q9Y5E1	797 aa		11.73	□□□□□ -0.53
DNMT1-219	ENST00000589349	WASL	O00401	505 aa	Predicted RBP	11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	SMCP	P49901	116 aa	Predicted RBP	11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	TRIM26	Q12899	539 aa	Predicted RBP	11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	IRF5	Q13568	498 aa		11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	NBPF1	Q3BBV0	1214 aa		11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	L3MBTL2	Q969R5	705 aa		11.72	□□□□□ -0.53
DNMT1-219	ENST00000589349	EIF3A	Q14152	1382 aa	Known RBP	11.71	□□□□□ -0.53
DNMT1-219	ENST00000589349	GPRASP1	Q5JY77	1395 aa		11.71	□□□□□ -0.53
DNMT1-219	ENST00000589349	RBM6	P78332	1123 aa	Known RBP	11.71	□□□□□ -0.53
DNMT1-219	ENST00000589349	SRPK2	P78362	688 aa	Known RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms