RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 RGS12O14924 1447 aa7.78□□□□□ -1.16
LIG3-206ENST00000586058 RGPD3A6NKT7 1758 aaPredicted RBP7.77□□□□□ -1.17
LIG3-206ENST00000586058 RGPD4Q7Z3J3 1758 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 SCN7AQ01118 1682 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 HMMRO75330 724 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 GNAI3P08754 354 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 RLBP1P12271 317 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 ZNF772Q68DY9 489 aaPredicted RBP7.77□□□□□ -1.17
LIG3-206ENST00000586058 INTS3Q68E01 1043 aaKnown RBP7.77□□□□□ -1.17
LIG3-206ENST00000586058 RASEFQ8IZ41 740 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 VSIG10Q8N0Z9 540 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 SMARCC1Q92922 1105 aaPredicted RBP7.77□□□□□ -1.17
LIG3-206ENST00000586058 KIF12Q96FN5 646 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 ZNF496Q96IT1 587 aaPredicted RBP7.77□□□□□ -1.17
LIG3-206ENST00000586058 DDX21Q9NR30 783 aaKnown RBP eCLIP7.77□□□□□ -1.17
LIG3-206ENST00000586058 ATP10DQ9P241 1426 aa7.77□□□□□ -1.17
LIG3-206ENST00000586058 KCNQ3O43525 872 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 PTCD1O75127 700 aaKnown RBP7.76□□□□□ -1.17
LIG3-206ENST00000586058 STARD3NLO95772 234 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 MYL6BP14649 208 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 HMGB2P26583 209 aaKnown RBP7.76□□□□□ -1.17
LIG3-206ENST00000586058 RIC3Q7Z5B4 369 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 DNAAF4Q8WXU2 420 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 GJD4Q96KN9 370 aaPredicted RBP7.76□□□□□ -1.17
LIG3-206ENST00000586058 SRCIN1Q9C0H9 1055 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 METRNQ9UJH8 293 aa7.76□□□□□ -1.17
LIG3-206ENST00000586058 C4AP0C0L4 1744 aa7.75□□□□□ -1.17
LIG3-206ENST00000586058 C4BP0C0L5 1744 aa7.75□□□□□ -1.17
LIG3-206ENST00000586058 UBTFL1P0CB47 393 aaPredicted RBP7.75□□□□□ -1.17
LIG3-206ENST00000586058 KIF6Q6ZMV9 814 aa7.75□□□□□ -1.17
LIG3-206ENST00000586058 TNNQ9UQP3 1299 aa7.75□□□□□ -1.17
LIG3-206ENST00000586058 SPEF2Q9C093 1822 aa7.75□□□□□ -1.17
LIG3-206ENST00000586058 PALLDQ8WX93 1383 aa7.74□□□□□ -1.17
LIG3-206ENST00000586058 AIMP1Q12904 312 aaKnown RBP7.74□□□□□ -1.17
LIG3-206ENST00000586058 KSR2Q6VAB6 950 aa7.74□□□□□ -1.17
LIG3-206ENST00000586058 SLC39A7Q92504 469 aa7.74□□□□□ -1.17
LIG3-206ENST00000586058 PHAXQ9H814 394 aaKnown RBP7.74□□□□□ -1.17
LIG3-206ENST00000586058 TRPC6Q9Y210 931 aa7.74□□□□□ -1.17
LIG3-206ENST00000586058 ZNF330Q9Y3S2 320 aaPredicted RBP7.74□□□□□ -1.17
LIG3-206ENST00000586058 TNS1Q9HBL0 1735 aaKnown RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 PI4KAP2A4QPH2 592 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 F6X3S4 739 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 ALDH1L1O75891 902 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 GNAI2P04899 355 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 C7P10643 843 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 PRIM1P49642 420 aaKnown RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 ATN1P54259 1190 aaPredicted RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 HDAC1Q13547 482 aaPredicted RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 G2E3Q7L622 706 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 RPAP2Q8IXW5 612 aaPredicted RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 PI4KAP1Q8N8J0 262 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 PIGBQ92521 554 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 GCC1Q96CN9 775 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 ACSBG1Q96GR2 724 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 QTRT2Q9H974 415 aaKnown RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 ZBTB40Q9NUA8 1239 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 C9orf78Q9NZ63 289 aaPredicted RBP7.73□□□□□ -1.17
LIG3-206ENST00000586058 MAP3K2Q9Y2U5 619 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 KDM2BQ8NHM5 1336 aa7.73□□□□□ -1.17
LIG3-206ENST00000586058 UBR3Q6ZT12 1888 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 DDX60Q8IY21 1712 aaKnown RBP7.72□□□□□ -1.17
LIG3-206ENST00000586058 MYH14Q7Z406 1995 aaKnown RBP7.72□□□□□ -1.17
LIG3-206ENST00000586058 ZBTB7BO15156 539 aaPredicted RBP7.72□□□□□ -1.17
LIG3-206ENST00000586058 MAP3K13O43283 966 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 POTEJP0CG39 1038 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 MARCH10Q8NA82 808 aaPredicted RBP7.72□□□□□ -1.17
LIG3-206ENST00000586058 LINS1Q8NG48 757 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 FBXO41Q8TF61 875 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 XAGE3Q8WTP9 111 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 ARXQ96QS3 562 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 ATG3Q9NT62 314 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 ASAP1Q9ULH1 1129 aa7.72□□□□□ -1.17
LIG3-206ENST00000586058 ADCY9O60503 1353 aa7.71□□□□□ -1.17
LIG3-206ENST00000586058 PRAMEF22A3QJZ6 481 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 ANXA1P04083 346 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 ATP6V1AP38606 617 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 RBM6P78332 1123 aaKnown RBP7.71□□□□□ -1.18
LIG3-206ENST00000586058 HSP90AB3PQ58FF7 597 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 ANKRD13DQ6ZTN6 518 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 COPS6Q7L5N1 327 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 SEPT12Q8IYM1 358 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 PLCD3Q8N3E9 789 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 PLBD2Q8NHP8 589 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 BMP2KQ9NSY1 1161 aaPredicted RBP7.71□□□□□ -1.18
LIG3-206ENST00000586058 USP16Q9Y5T5 823 aa7.71□□□□□ -1.18
LIG3-206ENST00000586058 IBTKQ9P2D0 1353 aaPredicted RBP7.71□□□□□ -1.18
LIG3-206ENST00000586058 MYH13Q9UKX3 1938 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 FAM196AQ6ZSG2 479 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 KRT27Q7Z3Y8 459 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 DNAJC10Q8IXB1 793 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 MEIS3Q99687 375 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 MYD88Q99836 296 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 METTL22Q9BUU2 404 aaPredicted RBP7.7□□□□□ -1.18
LIG3-206ENST00000586058 C1orf115Q9H7X2 142 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 ZNF652Q9Y2D9 606 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 TUBGCP6Q96RT7 1819 aa7.7□□□□□ -1.18
LIG3-206ENST00000586058 COL24A1Q17RW2 1714 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 QSER1Q2KHR3 1735 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 A0A087WZG4 1122 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 LOC102724428A0A0B4J2F2 783 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms