RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 NPM2Q86SE8 214 aaKnown RBP17.44■□□□□ 0.38
CDK5RAP3-219ENST00000580670 METTL22Q9BUU2 404 aaPredicted RBP17.44■□□□□ 0.38
CDK5RAP3-219ENST00000580670 RREB1Q92766 1687 aa17.44■□□□□ 0.38
CDK5RAP3-219ENST00000580670 NEXNQ0ZGT2 675 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 KIF6Q6ZMV9 814 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 ARXQ96QS3 562 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 MEIS3Q99687 375 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 PCDHB15Q9Y5E8 787 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 MYH14Q7Z406 1995 aaKnown RBP17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 LINS1Q8NG48 757 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 MYD88Q99836 296 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 ZBTB3Q9H5J0 574 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 CNTNAP4Q9C0A0 1308 aa17.43■□□□□ 0.38
CDK5RAP3-219ENST00000580670 ARFGEF2Q9Y6D5 1785 aa17.42■□□□□ 0.38
CDK5RAP3-219ENST00000580670 ALDH1L1O75891 902 aa17.42■□□□□ 0.38
CDK5RAP3-219ENST00000580670 EIF5P55010 431 aaKnown RBP17.42■□□□□ 0.38
CDK5RAP3-219ENST00000580670 C1orf115Q9H7X2 142 aa17.42■□□□□ 0.38
CDK5RAP3-219ENST00000580670 CWF19L2Q2TBE0 894 aaKnown RBP17.41■□□□□ 0.38
CDK5RAP3-219ENST00000580670 NUP188Q5SRE5 1749 aa17.41■□□□□ 0.38
CDK5RAP3-219ENST00000580670 APBA3O96018 575 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 RC3H1Q5TC82 1133 aaKnown RBP17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 USP44Q9H0E7 712 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 RBM19Q9Y4C8 960 aaKnown RBP17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 MAP3K15Q6ZN16 1313 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 IGKV5-2P06315 115 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 GNAI3P08754 354 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 SLC27A3Q5K4L6 730 aa17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 DZIP3Q86Y13 1208 aaKnown RBP17.4■□□□□ 0.38
CDK5RAP3-219ENST00000580670 TAF1LQ8IZX4 1826 aa17.39■□□□□ 0.37
CDK5RAP3-219ENST00000580670 NEURL1BA8MQ27 555 aa17.39■□□□□ 0.37
CDK5RAP3-219ENST00000580670 LRRC4BQ9NT99 713 aa17.39■□□□□ 0.37
CDK5RAP3-219ENST00000580670 ATP5J2-PTCD1G3V325 749 aa17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 TBC1D2BQ9UPU7 963 aa17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 COL15A1P39059 1388 aa17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 PLSCR1O15162 318 aa17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 UBTFL1P0CB47 393 aaPredicted RBP17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 C9orf78Q9NZ63 289 aaPredicted RBP17.38■□□□□ 0.37
CDK5RAP3-219ENST00000580670 GNPATO15228 680 aa17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 IGHDP01880 384 aa17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 GNAI2P04899 355 aa17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 TXNRD1Q16881 649 aa17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 RWDD1Q9H446 243 aaPredicted RBP17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 C4BP0C0L5 1744 aa17.37■□□□□ 0.37
CDK5RAP3-219ENST00000580670 A0A087WZG4 1122 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 ERVV-1B6SEH8 477 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 RPS6KA4O75676 772 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 NBPF7P0C2Y1 421 aaPredicted RBP17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 TCIRG1Q13488 830 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 GCKRQ14397 625 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 HLFQ16534 295 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 GIGYF2Q6Y7W6 1299 aaKnown RBP17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 TNS1Q9HBL0 1735 aaKnown RBP17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 AFDNP55196 1824 aaKnown RBP17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 KDM2BQ8NHM5 1336 aa17.36■□□□□ 0.37
CDK5RAP3-219ENST00000580670 GRM8O00222 908 aa17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 CENPQQ7L2Z9 268 aaPredicted RBP17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 AK7Q96M32 723 aa17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 IBTKQ9P2D0 1353 aaPredicted RBP17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 HDAC1Q13547 482 aaPredicted RBP17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 PROM2Q8N271 834 aa17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 RTCBQ9Y3I0 505 aaKnown RBP17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 LRRFIP2Q9Y608 721 aaKnown RBP17.35■□□□□ 0.37
CDK5RAP3-219ENST00000580670 HSP90AB3PQ58FF7 597 aa17.34■□□□□ 0.37
CDK5RAP3-219ENST00000580670 CAMTA2O94983 1202 aa17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 HMGB2P26583 209 aaKnown RBP17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 CEP85Q6P2H3 762 aa17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 RPAP2Q8IXW5 612 aaPredicted RBP17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 CCDC191Q8NCU4 936 aa17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 ISCA1Q9BUE6 129 aa17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 CWC25Q9NXE8 425 aaPredicted RBP17.33■□□□□ 0.37
CDK5RAP3-219ENST00000580670 UTYO14607 1347 aa17.33■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SMIM5Q71RC9 77 aa17.33■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SIRT2Q8IXJ6 389 aa17.33■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ANKRD44Q8N8A2 993 aa17.33■□□□□ 0.36
CDK5RAP3-219ENST00000580670 HDAC5Q9UQL6 1122 aa17.33■□□□□ 0.36
CDK5RAP3-219ENST00000580670 NUP98P52948 1817 aa17.32■□□□□ 0.36
CDK5RAP3-219ENST00000580670 TRIM28Q13263 835 aaKnown RBP17.32■□□□□ 0.36
CDK5RAP3-219ENST00000580670 GPTP24298 496 aa17.31■□□□□ 0.36
CDK5RAP3-219ENST00000580670 AMIGO3Q86WK7 504 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 RGPD3A6NKT7 1758 aaPredicted RBP17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ANKRD36CQ5JPF3 1778 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 RGPD4Q7Z3J3 1758 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 PHF14O94880 888 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 TRAPPC3LQ5T215 181 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 UBE3BQ7Z3V4 1068 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 JARID2Q92833 1246 aaPredicted RBP17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SUCLG2Q96I99 432 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ZNF652Q9Y2D9 606 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 BCORQ6W2J9 1755 aa17.3■□□□□ 0.36
CDK5RAP3-219ENST00000580670 HMMRO75330 724 aa17.29■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ATP8B2P98198 1209 aa17.29■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SF3B2Q13435 895 aaKnown RBP17.29■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ARHGEF1Q92888 912 aaKnown RBP17.29■□□□□ 0.36
CDK5RAP3-219ENST00000580670 NARFQ9UHQ1 456 aa17.29■□□□□ 0.36
CDK5RAP3-219ENST00000580670 H7C1W4 665 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ZPR1O75312 459 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 NLRP10Q86W26 655 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ZNF34Q8IZ26 560 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 UBR3Q6ZT12 1888 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 ADRA2BP18089 450 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms