RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 N4BP2Q86UW6 1770 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-209ENST00000573474 IBTKQ9P2D0 1353 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-209ENST00000573474 LINC00116Q8NCU8 138 aa17.2■□□□□ 0.34
CCDC40-209ENST00000573474 MYD88Q99836 296 aa17.2■□□□□ 0.34
CCDC40-209ENST00000573474 USP44Q9H0E7 712 aa17.2■□□□□ 0.34
CCDC40-209ENST00000573474 ZNF330Q9Y3S2 320 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-209ENST00000573474 KDM2BQ8NHM5 1336 aa17.2■□□□□ 0.34
CCDC40-209ENST00000573474 IGHDP01880 384 aa17.19■□□□□ 0.34
CCDC40-209ENST00000573474 GNAI2P04899 355 aa17.19■□□□□ 0.34
CCDC40-209ENST00000573474 EIF5P55010 431 aaKnown RBP17.19■□□□□ 0.34
CCDC40-209ENST00000573474 HDAC1Q13547 482 aaPredicted RBP17.19■□□□□ 0.34
CCDC40-209ENST00000573474 RC3H1Q5TC82 1133 aaKnown RBP17.19■□□□□ 0.34
CCDC40-209ENST00000573474 C1orf115Q9H7X2 142 aa17.19■□□□□ 0.34
CCDC40-209ENST00000573474 CNTNAP4Q9C0A0 1308 aa17.19■□□□□ 0.34
CCDC40-209ENST00000573474 IGKV5-2P06315 115 aa17.18■□□□□ 0.34
CCDC40-209ENST00000573474 ZBTB3Q9H5J0 574 aa17.18■□□□□ 0.34
CCDC40-209ENST00000573474 NEURL1BA8MQ27 555 aa17.17■□□□□ 0.34
CCDC40-209ENST00000573474 UBTFL1P0CB47 393 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-209ENST00000573474 CWF19L2Q2TBE0 894 aaKnown RBP17.17■□□□□ 0.34
CCDC40-209ENST00000573474 ILDR1Q86SU0 546 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-209ENST00000573474 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-209ENST00000573474 ARXQ96QS3 562 aa17.17■□□□□ 0.34
CCDC40-209ENST00000573474 C9orf78Q9NZ63 289 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-209ENST00000573474 HDAC5Q9UQL6 1122 aa17.17■□□□□ 0.34
CCDC40-209ENST00000573474 MAP3K15Q6ZN16 1313 aa17.17■□□□□ 0.34
CCDC40-209ENST00000573474 RREB1Q92766 1687 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 A0A087WZG4 1122 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 ERVV-1B6SEH8 477 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 HMGB2P26583 209 aaKnown RBP17.16■□□□□ 0.34
CCDC40-209ENST00000573474 KCNQ4P56696 695 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 SLC27A3Q5K4L6 730 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 LY75O60449 1722 aa17.16■□□□□ 0.34
CCDC40-209ENST00000573474 COL5A3P25940 1745 aaPredicted RBP17.16■□□□□ 0.34
CCDC40-209ENST00000573474 TCIRG1Q13488 830 aa17.15■□□□□ 0.34
CCDC40-209ENST00000573474 GCKRQ14397 625 aa17.15■□□□□ 0.34
CCDC40-209ENST00000573474 DZIP3Q86Y13 1208 aaKnown RBP17.15■□□□□ 0.34
CCDC40-209ENST00000573474 ANKRD44Q8N8A2 993 aa17.15■□□□□ 0.34
CCDC40-209ENST00000573474 UTYO14607 1347 aa17.15■□□□□ 0.34
CCDC40-209ENST00000573474 GRM8O00222 908 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 PLSCR1O15162 318 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 HSP90AB3PQ58FF7 597 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 CEP85Q6P2H3 762 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 GIGYF2Q6Y7W6 1299 aaKnown RBP17.14■□□□□ 0.33
CCDC40-209ENST00000573474 SIRT2Q8IXJ6 389 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 ARFGEF2Q9Y6D5 1785 aa17.14■□□□□ 0.33
CCDC40-209ENST00000573474 ATP5J2-PTCD1G3V325 749 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 RPS6KA4O75676 772 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 NBPF7P0C2Y1 421 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-209ENST00000573474 TRIM28Q13263 835 aaKnown RBP17.13■□□□□ 0.33
CCDC40-209ENST00000573474 CCDC191Q8NCU4 936 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 ISCA1Q9BUE6 129 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 CWC25Q9NXE8 425 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-209ENST00000573474 TBC1D2BQ9UPU7 963 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 LRRFIP2Q9Y608 721 aaKnown RBP17.13■□□□□ 0.33
CCDC40-209ENST00000573474 NUP188Q5SRE5 1749 aa17.13■□□□□ 0.33
CCDC40-209ENST00000573474 APBA3O96018 575 aa17.12■□□□□ 0.33
CCDC40-209ENST00000573474 HLFQ16534 295 aa17.12■□□□□ 0.33
CCDC40-209ENST00000573474 LRRC4BQ9NT99 713 aa17.12■□□□□ 0.33
CCDC40-209ENST00000573474 COL15A1P39059 1388 aa17.12■□□□□ 0.33
CCDC40-209ENST00000573474 MYH14Q7Z406 1995 aaKnown RBP17.11■□□□□ 0.33
CCDC40-209ENST00000573474 HMMRO75330 724 aa17.11■□□□□ 0.33
CCDC40-209ENST00000573474 ATP8B2P98198 1209 aa17.11■□□□□ 0.33
CCDC40-209ENST00000573474 PELP1Q8IZL8 1130 aaKnown RBP17.11■□□□□ 0.33
CCDC40-209ENST00000573474 GNPATO15228 680 aa17.1■□□□□ 0.33
CCDC40-209ENST00000573474 CAMTA2O94983 1202 aa17.1■□□□□ 0.33
CCDC40-209ENST00000573474 TXNRD1Q16881 649 aa17.1■□□□□ 0.33
CCDC40-209ENST00000573474 GCC1Q96CN9 775 aa17.1■□□□□ 0.33
CCDC40-209ENST00000573474 RTCBQ9Y3I0 505 aaKnown RBP17.1■□□□□ 0.33
CCDC40-209ENST00000573474 H7C1W4 665 aa17.09■□□□□ 0.33
CCDC40-209ENST00000573474 RGL2O15211 777 aa17.09■□□□□ 0.33
CCDC40-209ENST00000573474 SMC5Q8IY18 1101 aa17.09■□□□□ 0.33
CCDC40-209ENST00000573474 PROM2Q8N271 834 aa17.09■□□□□ 0.33
CCDC40-209ENST00000573474 AK7Q96M32 723 aa17.09■□□□□ 0.33
CCDC40-209ENST00000573474 CLEC4GQ6UXB4 293 aa17.08■□□□□ 0.32
CCDC40-209ENST00000573474 SUCLG2Q96I99 432 aa17.08■□□□□ 0.32
CCDC40-209ENST00000573474 ZNF652Q9Y2D9 606 aa17.08■□□□□ 0.32
CCDC40-209ENST00000573474 TAF1LQ8IZX4 1826 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 CASP7P55210 303 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 UBE3BQ7Z3V4 1068 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 NLRP10Q86W26 655 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 ZNF34Q8IZ26 560 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 DCTPP1Q9H773 170 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 C4BP0C0L5 1744 aa17.07■□□□□ 0.32
CCDC40-209ENST00000573474 MTX1Q13505 466 aa17.06■□□□□ 0.32
CCDC40-209ENST00000573474 TRAPPC3LQ5T215 181 aa17.06■□□□□ 0.32
CCDC40-209ENST00000573474 PPP1R42Q7Z4L9 355 aa17.06■□□□□ 0.32
CCDC40-209ENST00000573474 SSH3Q8TE77 659 aa17.06■□□□□ 0.32
CCDC40-209ENST00000573474 NARFQ9UHQ1 456 aa17.06■□□□□ 0.32
CCDC40-209ENST00000573474 AFDNP55196 1824 aaKnown RBP17.05■□□□□ 0.32
CCDC40-209ENST00000573474 PNMA6EA0A0J9YXQ4 647 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 PCCAP05165 728 aaPredicted RBP17.05■□□□□ 0.32
CCDC40-209ENST00000573474 ADRA2BP18089 450 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 GPTP24298 496 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 POLA2Q14181 598 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 JARID2Q92833 1246 aaPredicted RBP17.05■□□□□ 0.32
CCDC40-209ENST00000573474 KAZALD1Q96I82 304 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 PDZRN3Q9UPQ7 1066 aa17.05■□□□□ 0.32
CCDC40-209ENST00000573474 SRGAP3O43295 1099 aa17.04■□□□□ 0.32
CCDC40-209ENST00000573474 ZPR1O75312 459 aa17.04■□□□□ 0.32
CCDC40-209ENST00000573474 PARP10Q53GL7 1025 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms