RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 NBPF4Q96M43 638 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 F13A1P00488 732 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 LRRC59Q96AG4 307 aaKnown RBP20.51■□□□□ 0.87
VPS53-215ENST00000573028 PDRG1Q9NUG6 133 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 BTBD11A6QL63 1104 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 GLRX3O76003 335 aaKnown RBP20.51■□□□□ 0.87
VPS53-215ENST00000573028 KCNA6P17658 529 aa20.51■□□□□ 0.87
VPS53-215ENST00000573028 CWF19L2Q2TBE0 894 aaKnown RBP20.5■□□□□ 0.87
VPS53-215ENST00000573028 FERMT3Q86UX7 667 aa20.5■□□□□ 0.87
VPS53-215ENST00000573028 TCEANC2Q96MN5 208 aa20.5■□□□□ 0.87
VPS53-215ENST00000573028 NALCNQ8IZF0 1738 aa20.5■□□□□ 0.87
VPS53-215ENST00000573028 ZNF530Q6P9A1 599 aaPredicted RBP20.49■□□□□ 0.87
VPS53-215ENST00000573028 UBE2HP62256 183 aa20.49■□□□□ 0.87
VPS53-215ENST00000573028 AIMP1Q12904 312 aaKnown RBP20.49■□□□□ 0.87
VPS53-215ENST00000573028 HSP90AB4PQ58FF6 505 aa20.49■□□□□ 0.87
VPS53-215ENST00000573028 AACSQ86V21 672 aa20.49■□□□□ 0.87
VPS53-215ENST00000573028 RUFY2Q8WXA3 655 aa20.49■□□□□ 0.87
VPS53-215ENST00000573028 MAP3K2Q9Y2U5 619 aa20.49■□□□□ 0.87
VPS53-215ENST00000573028 LMOD2Q6P5Q4 547 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 TOPAZ1Q8N9V7 1692 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 FMN2Q9NZ56 1722 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 JARID2Q92833 1246 aaPredicted RBP20.48■□□□□ 0.87
VPS53-215ENST00000573028 SIL1Q9H173 461 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 HYPKQ9NX55 129 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 CYP46A1Q9Y6A2 500 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 XRN1Q8IZH2 1706 aaKnown RBP20.48■□□□□ 0.87
VPS53-215ENST00000573028 FAM173BQ6P4H8 233 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 CCDC8Q9H0W5 538 aaPredicted RBP20.48■□□□□ 0.87
VPS53-215ENST00000573028 ATP6V1DQ9Y5K8 247 aa20.48■□□□□ 0.87
VPS53-215ENST00000573028 UBR1Q8IWV7 1749 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 PROSER3Q2NL68 480 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 ECHDC1Q9NTX5 307 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 TBX22Q9Y458 520 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 RGPD8O14715 1765 aaPredicted RBP20.47■□□□□ 0.87
VPS53-215ENST00000573028 PRAMEF22A3QJZ6 481 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 SASS6Q6UVJ0 657 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 FAM184AQ8NB25 1140 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 TSC1Q92574 1164 aa20.47■□□□□ 0.87
VPS53-215ENST00000573028 FAM208AQ9UK61 1670 aaKnown RBP20.47■□□□□ 0.87
VPS53-215ENST00000573028 TERF1P54274 439 aa20.46■□□□□ 0.87
VPS53-215ENST00000573028 FAM227BQ96M60 508 aa20.46■□□□□ 0.87
VPS53-215ENST00000573028 GPATCH3Q96I76 525 aa20.46■□□□□ 0.87
VPS53-215ENST00000573028 ZKSCAN1P17029 563 aaPredicted RBP20.45■□□□□ 0.86
VPS53-215ENST00000573028 SPC24Q8NBT2 197 aa20.45■□□□□ 0.86
VPS53-215ENST00000573028 COL9A3Q14050 684 aaPredicted RBP20.45■□□□□ 0.86
VPS53-215ENST00000573028 BABAM1Q9NWV8 329 aa20.45■□□□□ 0.86
VPS53-215ENST00000573028 ME3Q16798 604 aa20.44■□□□□ 0.86
VPS53-215ENST00000573028 IL17RAQ96F46 866 aa20.44■□□□□ 0.86
VPS53-215ENST00000573028 MTMR6Q9Y217 621 aa20.44■□□□□ 0.86
VPS53-215ENST00000573028 CAMK4Q16566 473 aa20.44■□□□□ 0.86
VPS53-215ENST00000573028 RBM8AQ9Y5S9 174 aaKnown RBP20.44■□□□□ 0.86
VPS53-215ENST00000573028 EPB41L2O43491 1005 aaKnown RBP20.43■□□□□ 0.86
VPS53-215ENST00000573028 TMEM87AQ8NBN3 555 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 BOLA2Q9H3K6 86 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 PIK3C2AO00443 1686 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 ADCY9O60503 1353 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 TTC41PQ6P2S7 1318 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 DIP2AQ14689 1571 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 FAM177BA6PVY3 158 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 STK3Q13188 491 aa20.43■□□□□ 0.86
VPS53-215ENST00000573028 LARP1BQ659C4 914 aaKnown RBP20.43■□□□□ 0.86
VPS53-215ENST00000573028 DBF4Q9UBU7 674 aaPredicted RBP20.43■□□□□ 0.86
VPS53-215ENST00000573028 UVSSAQ2YD98 709 aa20.42■□□□□ 0.86
VPS53-215ENST00000573028 KLHDC4Q8TBB5 520 aa20.42■□□□□ 0.86
VPS53-215ENST00000573028 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.42■□□□□ 0.86
VPS53-215ENST00000573028 NOLC1Q14978 699 aaKnown RBP eCLIP20.42■□□□□ 0.86
VPS53-215ENST00000573028 PHF8Q9UPP1 1060 aa20.42■□□□□ 0.86
VPS53-215ENST00000573028 TUBGCP6Q96RT7 1819 aa20.42■□□□□ 0.86
VPS53-215ENST00000573028 PXDNLA1KZ92 1463 aa20.42■□□□□ 0.86
VPS53-215ENST00000573028 NMIQ13287 307 aaPredicted RBP20.42■□□□□ 0.86
VPS53-215ENST00000573028 LETM1O95202 739 aaPredicted RBP20.41■□□□□ 0.86
VPS53-215ENST00000573028 PSME1Q06323 249 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 VPS53Q5VIR6 699 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 IP6K1Q92551 441 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 KDM4AO75164 1064 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 G3BP1Q13283 466 aaKnown RBP eCLIP20.41■□□□□ 0.86
VPS53-215ENST00000573028 C1orf141Q5JVX7 400 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 FSD1Q9BTV5 496 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 TPCN1Q9ULQ1 816 aa20.41■□□□□ 0.86
VPS53-215ENST00000573028 CREB3L3Q68CJ9 461 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 TLR7Q9NYK1 1049 aaKnown RBP20.4■□□□□ 0.86
VPS53-215ENST00000573028 CCDC171Q6TFL3 1326 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 DYNC1I1O14576 645 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 TFIP11Q9UBB9 837 aaKnown RBP20.4■□□□□ 0.86
VPS53-215ENST00000573028 ESCO1Q5FWF5 840 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 EVI5LQ96CN4 794 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 ZSWIM6Q9HCJ5 1215 aa20.4■□□□□ 0.86
VPS53-215ENST00000573028 ST3GAL1Q11201 340 aa20.39■□□□□ 0.85
VPS53-215ENST00000573028 THEMISQ8N1K5 641 aaPredicted RBP20.39■□□□□ 0.85
VPS53-215ENST00000573028 EAF2Q96CJ1 260 aaPredicted RBP20.39■□□□□ 0.85
VPS53-215ENST00000573028 PKNOX2Q96KN3 472 aa20.39■□□□□ 0.85
VPS53-215ENST00000573028 NWD1Q149M9 1564 aa20.39■□□□□ 0.85
VPS53-215ENST00000573028 ZSCAN31Q96LW9 406 aaPredicted RBP20.39■□□□□ 0.85
VPS53-215ENST00000573028 CEMIPQ8WUJ3 1361 aa20.39■□□□□ 0.85
VPS53-215ENST00000573028 PLEKHO1Q53GL0 409 aaPredicted RBP20.38■□□□□ 0.85
VPS53-215ENST00000573028 CDC37L1Q7L3B6 337 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 SUCLG2Q96I99 432 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 SH2B1Q9NRF2 756 aaPredicted RBP20.38■□□□□ 0.85
VPS53-215ENST00000573028 CCDC9Q9Y3X0 531 aaKnown RBP20.38■□□□□ 0.85
VPS53-215ENST00000573028 TAF6LQ9Y6J9 622 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms