RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 C2CD5Q86YS7 1000 aa26.53■■□□□ 1.84
CLK3-225ENST00000569063 NGEFQ8N5V2 710 aa26.53■■□□□ 1.84
CLK3-225ENST00000569063 MYL6BP14649 208 aa26.52■■□□□ 1.84
CLK3-225ENST00000569063 HLFQ16534 295 aa26.52■■□□□ 1.84
CLK3-225ENST00000569063 LAS1LQ9Y4W2 734 aaKnown RBP26.52■■□□□ 1.84
CLK3-225ENST00000569063 DLEC1Q9Y238 1755 aa26.51■■□□□ 1.83
CLK3-225ENST00000569063 MAP3K15Q6ZN16 1313 aa26.51■■□□□ 1.83
CLK3-225ENST00000569063 CFAP44Q96MT7 982 aa26.51■■□□□ 1.83
CLK3-225ENST00000569063 NIP7Q9Y221 180 aaKnown RBP eCLIP26.51■■□□□ 1.83
CLK3-225ENST00000569063 NPHP1O15259 732 aa26.5■■□□□ 1.83
CLK3-225ENST00000569063 EIF2S2P20042 333 aaKnown RBP26.5■■□□□ 1.83
CLK3-225ENST00000569063 ST5P78524 1137 aa26.5■■□□□ 1.83
CLK3-225ENST00000569063 PDIA6Q15084 440 aa26.5■■□□□ 1.83
CLK3-225ENST00000569063 NBPF5PQ86XG9 351 aaPredicted RBP26.5■■□□□ 1.83
CLK3-225ENST00000569063 CCDC24Q8N4L8 307 aa26.5■■□□□ 1.83
CLK3-225ENST00000569063 ANKRD31Q8N7Z5 1873 aa26.5■■□□□ 1.83
CLK3-225ENST00000569063 ATP10DQ9P241 1426 aa26.49■■□□□ 1.83
CLK3-225ENST00000569063 KIF6Q6ZMV9 814 aa26.49■■□□□ 1.83
CLK3-225ENST00000569063 TTLL7Q6ZT98 887 aa26.49■■□□□ 1.83
CLK3-225ENST00000569063 LRP10Q7Z4F1 713 aa26.49■■□□□ 1.83
CLK3-225ENST00000569063 TTLL6Q8N841 843 aa26.49■■□□□ 1.83
CLK3-225ENST00000569063 TPTE2Q6XPS3 522 aa26.47■■□□□ 1.83
CLK3-225ENST00000569063 ZNF853P0CG23 659 aa26.46■■□□□ 1.83
CLK3-225ENST00000569063 CALD1Q05682 793 aaKnown RBP26.46■■□□□ 1.83
CLK3-225ENST00000569063 KRT24Q2M2I5 525 aa26.46■■□□□ 1.83
CLK3-225ENST00000569063 HOXB7P09629 217 aa26.45■■□□□ 1.82
CLK3-225ENST00000569063 MRS2Q9HD23 443 aa26.45■■□□□ 1.82
CLK3-225ENST00000569063 PROSER3Q2NL68 480 aa26.44■■□□□ 1.82
CLK3-225ENST00000569063 ZBTB3Q9H5J0 574 aa26.44■■□□□ 1.82
CLK3-225ENST00000569063 MBIPQ9NS73 344 aa26.44■■□□□ 1.82
CLK3-225ENST00000569063 IFT57Q9NWB7 429 aa26.44■■□□□ 1.82
CLK3-225ENST00000569063 ZNF622Q969S3 477 aaKnown RBP eCLIP26.43■■□□□ 1.823e-6■□□□□ 10
CLK3-225ENST00000569063 NUP98P52948 1817 aa26.43■■□□□ 1.82
CLK3-225ENST00000569063 KLRG2A4D1S0 409 aaPredicted RBP26.42■■□□□ 1.82
CLK3-225ENST00000569063 SRGNP10124 158 aa26.42■■□□□ 1.82
CLK3-225ENST00000569063 GNAI1P63096 354 aa26.42■■□□□ 1.82
CLK3-225ENST00000569063 STYK1Q6J9G0 422 aa26.42■■□□□ 1.82
CLK3-225ENST00000569063 GIGYF2Q6Y7W6 1299 aaKnown RBP26.42■■□□□ 1.82
CLK3-225ENST00000569063 NECTIN2Q92692 538 aa26.42■■□□□ 1.82
CLK3-225ENST00000569063 DDX21Q9NR30 783 aaKnown RBP eCLIP26.42■■□□□ 1.82
CLK3-225ENST00000569063 COL11A2P13942 1736 aaPredicted RBP26.42■■□□□ 1.82
CLK3-225ENST00000569063 ANXA1P04083 346 aa26.41■■□□□ 1.82
CLK3-225ENST00000569063 ZNF34Q8IZ26 560 aa26.41■■□□□ 1.82
CLK3-225ENST00000569063 NYXQ9GZU5 481 aa26.41■■□□□ 1.82
CLK3-225ENST00000569063 FAM177BA6PVY3 158 aa26.4■■□□□ 1.82
CLK3-225ENST00000569063 C9orf131Q5VYM1 1079 aa26.4■■□□□ 1.82
CLK3-225ENST00000569063 CNKSR1Q969H4 720 aa26.4■■□□□ 1.82
CLK3-225ENST00000569063 MASTLQ96GX5 879 aa26.4■■□□□ 1.82
CLK3-225ENST00000569063 GPBP1L1Q9HC44 474 aaPredicted RBP26.4■■□□□ 1.82
CLK3-225ENST00000569063 CCDC27Q2M243 656 aa26.39■■□□□ 1.82
CLK3-225ENST00000569063 HDGFL1Q5TGJ6 251 aa26.39■■□□□ 1.82
CLK3-225ENST00000569063 DUSP27Q5VZP5 1158 aa26.39■■□□□ 1.82
CLK3-225ENST00000569063 IBTKQ9P2D0 1353 aaPredicted RBP26.38■■□□□ 1.81
CLK3-225ENST00000569063 COPS6Q7L5N1 327 aa26.38■■□□□ 1.81
CLK3-225ENST00000569063 UBN2Q6ZU65 1347 aa26.38■■□□□ 1.81
CLK3-225ENST00000569063 GPTP24298 496 aa26.37■■□□□ 1.81
CLK3-225ENST00000569063 GTF2E1P29083 439 aaPredicted RBP26.37■■□□□ 1.81
CLK3-225ENST00000569063 NCBP3Q53F19 620 aaKnown RBP26.37■■□□□ 1.81
CLK3-225ENST00000569063 ZNF526Q8TF50 670 aaPredicted RBP26.37■■□□□ 1.81
CLK3-225ENST00000569063 XAGE3Q8WTP9 111 aa26.37■■□□□ 1.81
CLK3-225ENST00000569063 CHPF2Q9P2E5 772 aa26.37■■□□□ 1.81
CLK3-225ENST00000569063 DBF4Q9UBU7 674 aaPredicted RBP26.36■■□□□ 1.81
CLK3-225ENST00000569063 NPR1P16066 1061 aa26.35■■□□□ 1.81
CLK3-225ENST00000569063 C1QTNF8P60827 252 aa26.35■■□□□ 1.81
CLK3-225ENST00000569063 SUSD4Q5VX71 490 aa26.35■■□□□ 1.81
CLK3-225ENST00000569063 C21orf2O43822 256 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 RASSF7Q02833 373 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 AIMP1Q12904 312 aaKnown RBP26.34■■□□□ 1.81
CLK3-225ENST00000569063 PARP10Q53GL7 1025 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 PRPF40BQ6NWY9 871 aaKnown RBP26.34■■□□□ 1.81
CLK3-225ENST00000569063 NUTM1Q86Y26 1132 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 WWC1Q8IX03 1113 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 RNF181Q9P0P0 153 aa26.34■■□□□ 1.81
CLK3-225ENST00000569063 ERFEQ4G0M1 354 aa26.33■■□□□ 1.81
CLK3-225ENST00000569063 PPP1R42Q7Z4L9 355 aa26.33■■□□□ 1.81
CLK3-225ENST00000569063 SBF1O95248 1867 aa26.33■■□□□ 1.81
CLK3-225ENST00000569063 RIC1Q4ADV7 1423 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 NFKBIEO00221 500 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 NTSR2O95665 410 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 LMNB1P20700 586 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 HSP90AB3PQ58FF7 597 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 ABCC12Q96J65 1359 aa26.32■■□□□ 1.8
CLK3-225ENST00000569063 ARFGEF2Q9Y6D5 1785 aa26.31■■□□□ 1.8
CLK3-225ENST00000569063 SLX4Q8IY92 1834 aa26.31■■□□□ 1.8
CLK3-225ENST00000569063 CRY2Q49AN0 593 aa26.31■■□□□ 1.8
CLK3-225ENST00000569063 HYPKQ9NX55 129 aa26.31■■□□□ 1.8
CLK3-225ENST00000569063 PRELPP51888 382 aa26.3■■□□□ 1.8
CLK3-225ENST00000569063 TCIRG1Q13488 830 aa26.3■■□□□ 1.8
CLK3-225ENST00000569063 SOGA3Q5TF21 947 aa26.3■■□□□ 1.8
CLK3-225ENST00000569063 C7orf43Q8WVR3 580 aa26.3■■□□□ 1.8
CLK3-225ENST00000569063 ZNF219Q9P2Y4 722 aaPredicted RBP26.3■■□□□ 1.8
CLK3-225ENST00000569063 C8orf58Q8NAV2 365 aa26.29■■□□□ 1.8
CLK3-225ENST00000569063 ZC3H4Q9UPT8 1303 aaKnown RBP26.29■■□□□ 1.8
CLK3-225ENST00000569063 TNRC6CQ9HCJ0 1690 aaKnown RBP26.28■■□□□ 1.8
CLK3-225ENST00000569063 SENP3-EIF4A1A0A087X0R7 540 aa26.28■■□□□ 1.8
CLK3-225ENST00000569063 ELL2O00472 640 aaPredicted RBP26.28■■□□□ 1.8
CLK3-225ENST00000569063 ALDH1B1P30837 517 aa26.28■■□□□ 1.8
CLK3-225ENST00000569063 ANKRD13DQ6ZTN6 518 aa26.28■■□□□ 1.8
CLK3-225ENST00000569063 PLBD2Q8NHP8 589 aa26.28■■□□□ 1.8
CLK3-225ENST00000569063 UTP14AQ9BVJ6 771 aaKnown RBP26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms