RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 IL1RAPL2Q9NP60 686 aa18.75■□□□□ 0.59
COMMD4-215ENST00000566843 CHAF1AQ13111 956 aaPredicted RBP18.75■□□□□ 0.59
COMMD4-215ENST00000566843 HYPKQ9NX55 129 aa18.75■□□□□ 0.59
COMMD4-215ENST00000566843 ZHX1Q9UKY1 873 aaPredicted RBP18.75■□□□□ 0.59
COMMD4-215ENST00000566843 NPHP4O75161 1426 aaPredicted RBP18.74■□□□□ 0.59
COMMD4-215ENST00000566843 KCNA6P17658 529 aa18.74■□□□□ 0.59
COMMD4-215ENST00000566843 DIP2AQ14689 1571 aa18.74■□□□□ 0.59
COMMD4-215ENST00000566843 FAM177BA6PVY3 158 aa18.74■□□□□ 0.59
COMMD4-215ENST00000566843 CCDC192P0DO97 292 aa18.74■□□□□ 0.59
COMMD4-215ENST00000566843 DNM1Q05193 864 aaKnown RBP18.74■□□□□ 0.59
COMMD4-215ENST00000566843 KCNB2Q92953 911 aa18.74■□□□□ 0.59
COMMD4-215ENST00000566843 ZSCAN31Q96LW9 406 aaPredicted RBP18.74■□□□□ 0.59
COMMD4-215ENST00000566843 LARGE1O95461 756 aa18.73■□□□□ 0.59
COMMD4-215ENST00000566843 UBTFL1P0CB47 393 aaPredicted RBP18.73■□□□□ 0.59
COMMD4-215ENST00000566843 CNTROBQ8N137 903 aa18.73■□□□□ 0.59
COMMD4-215ENST00000566843 RHPN1Q8TCX5 695 aa18.73■□□□□ 0.59
COMMD4-215ENST00000566843 USP42Q9H9J4 1324 aaKnown RBP18.73■□□□□ 0.59
COMMD4-215ENST00000566843 PLEKHG3A1L390 1219 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 KIF20AO95235 890 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 GJB2P29033 226 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 VPS53Q5VIR6 699 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 SH2B1Q9NRF2 756 aaPredicted RBP18.72■□□□□ 0.59
COMMD4-215ENST00000566843 USP6P35125 1406 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 MAP3K5Q99683 1374 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 SYCP1Q15431 976 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 FAM200AQ8TCP9 573 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 TM6SF1Q9BZW5 370 aa18.72■□□□□ 0.59
COMMD4-215ENST00000566843 MAP4K4O95819 1239 aaPredicted RBP18.71■□□□□ 0.59
COMMD4-215ENST00000566843 PLCB2Q00722 1185 aa18.71■□□□□ 0.59
COMMD4-215ENST00000566843 KIF1BPQ96EK5 621 aa18.71■□□□□ 0.59
COMMD4-215ENST00000566843 ACEP12821 1306 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 PDIA4P13667 645 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 PPP1R42Q7Z4L9 355 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 CCDC83Q8IWF9 413 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 LARP6Q9BRS8 491 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 IGSF1Q8N6C5 1336 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 SURF6O75683 361 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 CASTP20810 708 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 SPC24Q8NBT2 197 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 RBM33Q96EV2 1170 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 ZSWIM6Q9HCJ5 1215 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 BABAM1Q9NWV8 329 aa18.7■□□□□ 0.58
COMMD4-215ENST00000566843 CHD2O14647 1828 aaKnown RBP18.7■□□□□ 0.58
COMMD4-215ENST00000566843 ELP1O95163 1332 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 ST3GAL1Q11201 340 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 FEZ1Q99689 392 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 PDRG1Q9NUG6 133 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 SBNO1A3KN83 1393 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 CCDC171Q6TFL3 1326 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 NUTM2FA1L443 756 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 TPRNQ4KMQ1 711 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 MRVI1Q9Y6F6 885 aa18.69■□□□□ 0.58
COMMD4-215ENST00000566843 FLT4P35916 1363 aa18.68■□□□□ 0.58
COMMD4-215ENST00000566843 TTC41PQ6P2S7 1318 aa18.68■□□□□ 0.58
COMMD4-215ENST00000566843 CPA1P15085 419 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 MAP3K11Q16584 847 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.67■□□□□ 0.58
COMMD4-215ENST00000566843 PTGS1P23219 599 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 TYRO3Q06418 890 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 CWC27Q6UX04 472 aaKnown RBP18.67■□□□□ 0.58
COMMD4-215ENST00000566843 SPG7Q9UQ90 795 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 LMTK3Q96Q04 1460 aa18.67■□□□□ 0.58
COMMD4-215ENST00000566843 TTC6Q86TZ1 520 aa18.66■□□□□ 0.58
COMMD4-215ENST00000566843 RUFY2Q8WXA3 655 aa18.66■□□□□ 0.58
COMMD4-215ENST00000566843 EYA1Q99502 592 aa18.66■□□□□ 0.58
COMMD4-215ENST00000566843 NUP62CLQ9H1M0 184 aa18.66■□□□□ 0.58
COMMD4-215ENST00000566843 CYP46A1Q9Y6A2 500 aa18.66■□□□□ 0.58
COMMD4-215ENST00000566843 SMTNL1A8MU46 457 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 GLRX3O76003 335 aaKnown RBP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 U2AF2P26368 475 aaKnown RBP eCLIP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 KRT85P78386 507 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 NCBP1Q09161 790 aaKnown RBP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 ADCK5Q3MIX3 580 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 HSP90AB4PQ58FF6 505 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 RBM43Q6ZSC3 357 aaKnown RBP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 JAKMIP1Q96N16 626 aaKnown RBP18.65■□□□□ 0.58
COMMD4-215ENST00000566843 TTC21AQ8NDW8 1320 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 SPDYE4A6NLX3 237 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 GNAT3A8MTJ3 354 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 PTH1RQ03431 593 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 ME3Q16798 604 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 NECTIN2Q92692 538 aa18.65■□□□□ 0.58
COMMD4-215ENST00000566843 LIG1P18858 919 aa18.64■□□□□ 0.57
COMMD4-215ENST00000566843 PLA2G4DQ86XP0 818 aa18.64■□□□□ 0.57
COMMD4-215ENST00000566843 OGFRQ9NZT2 677 aa18.64■□□□□ 0.57
COMMD4-215ENST00000566843 ADGRL3Q9HAR2 1447 aa18.64■□□□□ 0.57
COMMD4-215ENST00000566843 VPS37CA5D8V6 355 aaPredicted RBP18.63■□□□□ 0.57
COMMD4-215ENST00000566843 SRGAP3O43295 1099 aa18.63■□□□□ 0.57
COMMD4-215ENST00000566843 FGD1P98174 961 aa18.63■□□□□ 0.57
COMMD4-215ENST00000566843 NECTIN1Q15223 517 aa18.63■□□□□ 0.57
COMMD4-215ENST00000566843 PRPF40BQ6NWY9 871 aaKnown RBP18.63■□□□□ 0.57
COMMD4-215ENST00000566843 CCDC186Q7Z3E2 898 aa18.63■□□□□ 0.57
COMMD4-215ENST00000566843 TDRD7Q8NHU6 1098 aaKnown RBP18.63■□□□□ 0.57
COMMD4-215ENST00000566843 CBX8Q9HC52 389 aa18.63■□□□□ 0.57
COMMD4-215ENST00000566843 ZNF75DP51815 510 aa18.62■□□□□ 0.57
COMMD4-215ENST00000566843 LUZP1Q86V48 1076 aa18.62■□□□□ 0.57
COMMD4-215ENST00000566843 TAF7Q15545 349 aaPredicted RBP18.62■□□□□ 0.57
COMMD4-215ENST00000566843 LARP1BQ659C4 914 aaKnown RBP18.61■□□□□ 0.57
COMMD4-215ENST00000566843 IL17REQ8NFR9 667 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms