RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ANKRD36CQ5JPF3 1778 aa38.52■■■■□ 3.76
CTCF-203ENST00000566078 C1orf115Q9H7X2 142 aa38.52■■■■□ 3.76
CTCF-203ENST00000566078 NUP98P52948 1817 aa38.51■■■■□ 3.76
CTCF-203ENST00000566078 KCNQ4P56696 695 aa38.5■■■■□ 3.75
CTCF-203ENST00000566078 INTS5Q6P9B9 1019 aaKnown RBP38.5■■■■□ 3.75
CTCF-203ENST00000566078 LINC00116Q8NCU8 138 aa38.5■■■■□ 3.75
CTCF-203ENST00000566078 CCNL1Q9UK58 526 aaPredicted RBP38.5■■■■□ 3.75
CTCF-203ENST00000566078 ILDR1Q86SU0 546 aaPredicted RBP38.49■■■■□ 3.75
CTCF-203ENST00000566078 METTL22Q9BUU2 404 aaPredicted RBP38.49■■■■□ 3.75
CTCF-203ENST00000566078 IL6STP40189 918 aaPredicted RBP38.49■■■■□ 3.75
CTCF-203ENST00000566078 NEXNQ0ZGT2 675 aa38.48■■■■□ 3.75
CTCF-203ENST00000566078 C4BP0C0L5 1744 aa38.47■■■■□ 3.75
CTCF-203ENST00000566078 KIF6Q6ZMV9 814 aa38.47■■■■□ 3.75
CTCF-203ENST00000566078 LINS1Q8NG48 757 aa38.47■■■■□ 3.75
CTCF-203ENST00000566078 MYD88Q99836 296 aa38.47■■■■□ 3.75
CTCF-203ENST00000566078 ALDH1L1O75891 902 aa38.46■■■■□ 3.75
CTCF-203ENST00000566078 ZBTB3Q9H5J0 574 aa38.46■■■■□ 3.75
CTCF-203ENST00000566078 CWF19L2Q2TBE0 894 aaKnown RBP38.45■■■■□ 3.75
CTCF-203ENST00000566078 KDM2BQ8NHM5 1336 aa38.45■■■■□ 3.74
CTCF-203ENST00000566078 BCORQ6W2J9 1755 aa38.44■■■■□ 3.74
CTCF-203ENST00000566078 GNAI3P08754 354 aa38.44■■■■□ 3.74
CTCF-203ENST00000566078 CNTNAP4Q9C0A0 1308 aa38.44■■■■□ 3.74
CTCF-203ENST00000566078 NPM2Q86SE8 214 aaKnown RBP38.43■■■■□ 3.74
CTCF-203ENST00000566078 USP44Q9H0E7 712 aa38.43■■■■□ 3.74
CTCF-203ENST00000566078 IGHDP01880 384 aa38.42■■■■□ 3.74
CTCF-203ENST00000566078 IGKV5-2P06315 115 aa38.42■■■■□ 3.74
CTCF-203ENST00000566078 EIF5P55010 431 aaKnown RBP38.41■■■■□ 3.74
CTCF-203ENST00000566078 CENPQQ7L2Z9 268 aaPredicted RBP38.41■■■■□ 3.74
CTCF-203ENST00000566078 ARXQ96QS3 562 aa38.41■■■■□ 3.74
CTCF-203ENST00000566078 MAP3K15Q6ZN16 1313 aa38.4■■■■□ 3.74
CTCF-203ENST00000566078 RGPD3A6NKT7 1758 aaPredicted RBP38.4■■■■□ 3.74
CTCF-203ENST00000566078 RGPD4Q7Z3J3 1758 aa38.4■■■■□ 3.74
CTCF-203ENST00000566078 NEURL1BA8MQ27 555 aa38.39■■■■□ 3.74
CTCF-203ENST00000566078 RWDD1Q9H446 243 aaPredicted RBP38.39■■■■□ 3.74
CTCF-203ENST00000566078 UBTFL1P0CB47 393 aaPredicted RBP38.38■■■■□ 3.74
CTCF-203ENST00000566078 COL15A1P39059 1388 aa38.38■■■■□ 3.73
CTCF-203ENST00000566078 IBTKQ9P2D0 1353 aaPredicted RBP38.38■■■■□ 3.73
CTCF-203ENST00000566078 GNAI2P04899 355 aa38.38■■■■□ 3.73
CTCF-203ENST00000566078 DZIP3Q86Y13 1208 aaKnown RBP38.37■■■■□ 3.73
CTCF-203ENST00000566078 HDAC1Q13547 482 aaPredicted RBP38.36■■■■□ 3.73
CTCF-203ENST00000566078 C9orf78Q9NZ63 289 aaPredicted RBP38.36■■■■□ 3.73
CTCF-203ENST00000566078 SCN7AQ01118 1682 aa38.36■■■■□ 3.73
CTCF-203ENST00000566078 ATP5J2-PTCD1G3V325 749 aa38.35■■■■□ 3.73
CTCF-203ENST00000566078 RC3H1Q5TC82 1133 aaKnown RBP38.35■■■■□ 3.73
CTCF-203ENST00000566078 UBR3Q6ZT12 1888 aa38.35■■■■□ 3.73
CTCF-203ENST00000566078 NBPF7P0C2Y1 421 aaPredicted RBP38.34■■■■□ 3.73
CTCF-203ENST00000566078 TBC1D2BQ9UPU7 963 aa38.34■■■■□ 3.73
CTCF-203ENST00000566078 C4AP0C0L4 1744 aa38.34■■■■□ 3.73
CTCF-203ENST00000566078 GCKRQ14397 625 aa38.33■■■■□ 3.73
CTCF-203ENST00000566078 SLC27A3Q5K4L6 730 aa38.33■■■■□ 3.73
CTCF-203ENST00000566078 LRRC4BQ9NT99 713 aa38.33■■■■□ 3.73
CTCF-203ENST00000566078 LRRFIP2Q9Y608 721 aaKnown RBP38.33■■■■□ 3.73
CTCF-203ENST00000566078 GRM8O00222 908 aa38.32■■■■□ 3.73
CTCF-203ENST00000566078 CEP85Q6P2H3 762 aa38.32■■■■□ 3.73
CTCF-203ENST00000566078 APBA3O96018 575 aa38.3■■■■□ 3.72
CTCF-203ENST00000566078 GIGYF2Q6Y7W6 1299 aaKnown RBP38.3■■■■□ 3.72
CTCF-203ENST00000566078 SIRT2Q8IXJ6 389 aa38.3■■■■□ 3.72
CTCF-203ENST00000566078 ANKRD44Q8N8A2 993 aa38.3■■■■□ 3.72
CTCF-203ENST00000566078 HLFQ16534 295 aa38.3■■■■□ 3.72
CTCF-203ENST00000566078 RPAP2Q8IXW5 612 aaPredicted RBP38.3■■■■□ 3.72
CTCF-203ENST00000566078 UTYO14607 1347 aa38.29■■■■□ 3.72
CTCF-203ENST00000566078 ERVV-1B6SEH8 477 aa38.29■■■■□ 3.72
CTCF-203ENST00000566078 TCIRG1Q13488 830 aa38.29■■■■□ 3.72
CTCF-203ENST00000566078 GNPATO15228 680 aa38.28■■■■□ 3.72
CTCF-203ENST00000566078 A0A087WZG4 1122 aa38.27■■■■□ 3.72
CTCF-203ENST00000566078 RPS6KA4O75676 772 aa38.27■■■■□ 3.72
CTCF-203ENST00000566078 HSP90AB3PQ58FF7 597 aa38.27■■■■□ 3.72
CTCF-203ENST00000566078 ISCA1Q9BUE6 129 aa38.27■■■■□ 3.72
CTCF-203ENST00000566078 CWC25Q9NXE8 425 aaPredicted RBP38.27■■■■□ 3.72
CTCF-203ENST00000566078 PLSCR1O15162 318 aa38.26■■■■□ 3.71
CTCF-203ENST00000566078 TXNRD1Q16881 649 aa38.26■■■■□ 3.71
CTCF-203ENST00000566078 CCDC191Q8NCU4 936 aa38.25■■■■□ 3.71
CTCF-203ENST00000566078 AK7Q96M32 723 aa38.24■■■■□ 3.71
CTCF-203ENST00000566078 CAMTA2O94983 1202 aa38.23■■■■□ 3.71
CTCF-203ENST00000566078 HDAC5Q9UQL6 1122 aa38.23■■■■□ 3.71
CTCF-203ENST00000566078 RTCBQ9Y3I0 505 aaKnown RBP38.23■■■■□ 3.71
CTCF-203ENST00000566078 TUBGCP6Q96RT7 1819 aa38.21■■■■□ 3.71
CTCF-203ENST00000566078 PROM2Q8N271 834 aa38.21■■■■□ 3.71
CTCF-203ENST00000566078 TRIM28Q13263 835 aaKnown RBP38.2■■■■□ 3.7
CTCF-203ENST00000566078 SMIM5Q71RC9 77 aa38.2■■■■□ 3.7
CTCF-203ENST00000566078 UBE3BQ7Z3V4 1068 aa38.2■■■■□ 3.7
CTCF-203ENST00000566078 SUCLG2Q96I99 432 aa38.2■■■■□ 3.7
CTCF-203ENST00000566078 HMMRO75330 724 aa38.19■■■■□ 3.7
CTCF-203ENST00000566078 GPTP24298 496 aa38.19■■■■□ 3.7
CTCF-203ENST00000566078 ATP8B2P98198 1209 aa38.18■■■■□ 3.7
CTCF-203ENST00000566078 JARID2Q92833 1246 aaPredicted RBP38.18■■■■□ 3.7
CTCF-203ENST00000566078 MYH3P11055 1940 aa38.18■■■■□ 3.7
CTCF-203ENST00000566078 AMIGO3Q86WK7 504 aa38.16■■■■□ 3.7
CTCF-203ENST00000566078 SMC5Q8IY18 1101 aa38.16■■■■□ 3.7
CTCF-203ENST00000566078 HMGB2P26583 209 aaKnown RBP38.16■■■■□ 3.7
CTCF-203ENST00000566078 PNMA6EA0A0J9YXQ4 647 aa38.15■■■■□ 3.7
CTCF-203ENST00000566078 H7C1W4 665 aa38.15■■■■□ 3.7
CTCF-203ENST00000566078 CASP7P55210 303 aa38.15■■■■□ 3.7
CTCF-203ENST00000566078 NLRP10Q86W26 655 aa38.15■■■■□ 3.7
CTCF-203ENST00000566078 ZNF652Q9Y2D9 606 aa38.15■■■■□ 3.7
CTCF-203ENST00000566078 ZNF34Q8IZ26 560 aa38.14■■■■□ 3.7
CTCF-203ENST00000566078 GCC1Q96CN9 775 aa38.14■■■■□ 3.7
CTCF-203ENST00000566078 KAZALD1Q96I82 304 aa38.14■■■■□ 3.7
CTCF-203ENST00000566078 PHF14O94880 888 aa38.13■■■■□ 3.69
CTCF-203ENST00000566078 PPP1R42Q7Z4L9 355 aa38.12■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms