RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 DNAJC5Q9H3Z4 198 aa16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 MSH6P52701 1360 aa16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 AXIN2Q9Y2T1 843 aa16.78■□□□□ 0.28
GTF3C1-203ENST00000562609 BRD1O95696 1058 aa16.78■□□□□ 0.28
GTF3C1-203ENST00000562609 TPRNQ4KMQ1 711 aa16.78■□□□□ 0.28
GTF3C1-203ENST00000562609 SMARCA5O60264 1052 aaPredicted RBP16.78■□□□□ 0.28
GTF3C1-203ENST00000562609 INTS3Q68E01 1043 aaKnown RBP16.78■□□□□ 0.28
GTF3C1-203ENST00000562609 TEX2Q8IWB9 1127 aa16.77■□□□□ 0.28
GTF3C1-203ENST00000562609 RGS22Q8NE09 1264 aa16.77■□□□□ 0.28
GTF3C1-203ENST00000562609 MAP3K5Q99683 1374 aa16.77■□□□□ 0.28
GTF3C1-203ENST00000562609 HAP1P54257 671 aaPredicted RBP16.77■□□□□ 0.27
GTF3C1-203ENST00000562609 MPRIPQ6WCQ1 1025 aa16.77■□□□□ 0.27
GTF3C1-203ENST00000562609 KCNH5Q8NCM2 988 aa16.77■□□□□ 0.27
GTF3C1-203ENST00000562609 C16orf71Q8IYS4 520 aaPredicted RBP16.76■□□□□ 0.27
GTF3C1-203ENST00000562609 RGPD2P0DJD1 1756 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 SMTNL1A8MU46 457 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 KCNQ3O43525 872 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 EIF2S2P20042 333 aaKnown RBP16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 TAF7Q15545 349 aaPredicted RBP16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 USP48Q86UV5 1035 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 C16orf45Q96MC5 204 aaPredicted RBP16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 STK31Q9BXU1 1019 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 C19orf44Q9H6X5 657 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 TPM3P06753 285 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 CABLES1Q8TDN4 633 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 ZBTB9Q96C00 473 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 KIF24Q5T7B8 1368 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 NFAT5O94916 1531 aa16.75■□□□□ 0.27
GTF3C1-203ENST00000562609 AP5Z1O43299 807 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 ARHGEF25Q86VW2 580 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 TMX3Q96JJ7 454 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 CCDC183Q5T5S1 534 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 TSPYL1Q9H0U9 437 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 PTPRCP08575 1304 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 ANKRD24Q8TF21 1146 aa16.74■□□□□ 0.27
GTF3C1-203ENST00000562609 ZNF530Q6P9A1 599 aaPredicted RBP16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 PLEKHM2Q8IWE5 1019 aa16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 HTATSF1O43719 755 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 FLIIQ13045 1269 aa16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 OTUD7AQ8TE49 926 aaPredicted RBP16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 SECISBP2LQ93073 1101 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 ST7Q9NRC1 585 aa16.73■□□□□ 0.27
GTF3C1-203ENST00000562609 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 GOLGA6L6A8MZA4 724 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 ANXA1P04083 346 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 ATF3P18847 181 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 CEP85Q6P2H3 762 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 CCDC112Q8NEF3 446 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 PHAXQ9H814 394 aaKnown RBP16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 FEZ2Q9UHY8 353 aaPredicted RBP16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 RTL1A6NKG5 1358 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 TMEM94Q12767 1356 aa16.72■□□□□ 0.27
GTF3C1-203ENST00000562609 NEK4P51957 841 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 TTC22Q5TAA0 569 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 C1orf167Q5SNV9 1468 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 CHRM1P11229 460 aaPredicted RBP16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 TNNT1P13805 278 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 PTGS1P23219 599 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 KMT5BQ4FZB7 885 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 CCDC30Q5VVM6 783 aa16.71■□□□□ 0.27
GTF3C1-203ENST00000562609 MX1P20591 662 aa16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 HNRNPH2P55795 449 aaKnown RBP16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 HDGFL1Q5TGJ6 251 aa16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 ANKRD44Q8N8A2 993 aa16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 NOL8Q76FK4 1167 aaKnown RBP16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 ZNF397Q8NF99 534 aaPredicted RBP16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 DCTPP1Q9H773 170 aa16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 ATP10DQ9P241 1426 aa16.7■□□□□ 0.26
GTF3C1-203ENST00000562609 TEFQ10587 303 aa16.69■□□□□ 0.26
GTF3C1-203ENST00000562609 TNNT3P45378 269 aaPredicted RBP16.68■□□□□ 0.26
GTF3C1-203ENST00000562609 CHRNA2Q15822 529 aa16.68■□□□□ 0.26
GTF3C1-203ENST00000562609 CASC1Q6TDU7 716 aa16.68■□□□□ 0.26
GTF3C1-203ENST00000562609 PAXBP1Q9Y5B6 917 aa16.68■□□□□ 0.26
GTF3C1-203ENST00000562609 USP54Q70EL1 1684 aa16.68■□□□□ 0.26
GTF3C1-203ENST00000562609 GIMAP6Q6P9H5 292 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 FAM53CQ9NYF3 392 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 V9GYY5 206 aaPredicted RBP16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 BTBD11A6QL63 1104 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 REC8O95072 547 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 RBM6P78332 1123 aaKnown RBP16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 RAD51AP2Q09MP3 1159 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 LRMPQ12912 555 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 PLEKHO1Q53GL0 409 aaPredicted RBP16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 RPAP2Q8IXW5 612 aaPredicted RBP16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 ZNF592Q92610 1267 aa16.67■□□□□ 0.26
GTF3C1-203ENST00000562609 PRAMEF22A3QJZ6 481 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 SDSP20132 328 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 CYP2C19P33261 490 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 NLRP2Q9NX02 1062 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 EXOC6BQ9Y2D4 811 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 PXDNQ92626 1479 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 EIF4A1P60842 406 aaKnown RBP16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 NOL10Q9BSC4 688 aaKnown RBP16.66■□□□□ 0.26
GTF3C1-203ENST00000562609 CCT4P50991 539 aaKnown RBP16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 FAM193AP78312 1265 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CHMP4CQ96CF2 233 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CHPF2Q9P2E5 772 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CEMIPQ8WUJ3 1361 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms