RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 NFIXQ14938 502 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 HLFQ16534 295 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 CCDC30Q5VVM6 783 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 TBC1D9BQ66K14 1250 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 COPS6Q7L5N1 327 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 PARP3Q9Y6F1 533 aa18.48■□□□□ 0.55
USP3-221ENST00000561442 FHDC1Q9C0D6 1143 aaPredicted RBP18.47■□□□□ 0.55
USP3-221ENST00000561442 MAP3K15Q6ZN16 1313 aa18.47■□□□□ 0.55
USP3-221ENST00000561442 VAMP4O75379 141 aa18.46■□□□□ 0.55
USP3-221ENST00000561442 TM4SF1P30408 202 aa18.46■□□□□ 0.55
USP3-221ENST00000561442 HYPKQ9NX55 129 aa18.46■□□□□ 0.55
USP3-221ENST00000561442 ZNF652Q9Y2D9 606 aa18.46■□□□□ 0.55
USP3-221ENST00000561442 POLRMTO00411 1230 aaKnown RBP18.45■□□□□ 0.54
USP3-221ENST00000561442 STK31Q9BXU1 1019 aa18.45■□□□□ 0.54
USP3-221ENST00000561442 CHMP4AQ9BY43 222 aa18.45■□□□□ 0.54
USP3-221ENST00000561442 SCN7AQ01118 1682 aa18.44■□□□□ 0.54
USP3-221ENST00000561442 ERVV-1B6SEH8 477 aa18.44■□□□□ 0.54
USP3-221ENST00000561442 PHAXQ9H814 394 aaKnown RBP18.44■□□□□ 0.54
USP3-221ENST00000561442 COL24A1Q17RW2 1714 aa18.43■□□□□ 0.54
USP3-221ENST00000561442 CLEC4GQ6UXB4 293 aa18.43■□□□□ 0.54
USP3-221ENST00000561442 TRMT2AQ8IZ69 625 aaKnown RBP18.43■□□□□ 0.54
USP3-221ENST00000561442 SETDB2Q96T68 719 aa18.43■□□□□ 0.54
USP3-221ENST00000561442 NIP7Q9Y221 180 aaKnown RBP eCLIP18.43■□□□□ 0.54
USP3-221ENST00000561442 SERPINB2P05120 415 aa18.42■□□□□ 0.54
USP3-221ENST00000561442 GPTP24298 496 aa18.42■□□□□ 0.54
USP3-221ENST00000561442 ZBED9Q6R2W3 1325 aa18.42■□□□□ 0.54
USP3-221ENST00000561442 FAM177BA6PVY3 158 aa18.41■□□□□ 0.54
USP3-221ENST00000561442 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
USP3-221ENST00000561442 G2E3Q7L622 706 aa18.41■□□□□ 0.54
USP3-221ENST00000561442 SYT17Q9BSW7 474 aa18.41■□□□□ 0.54
USP3-221ENST00000561442 CARMIL3Q8ND23 1372 aa18.41■□□□□ 0.54
USP3-221ENST00000561442 RGL2O15211 777 aa18.4■□□□□ 0.54
USP3-221ENST00000561442 GIGYF2Q6Y7W6 1299 aaKnown RBP18.4■□□□□ 0.54
USP3-221ENST00000561442 ANKRD13DQ6ZTN6 518 aa18.4■□□□□ 0.54
USP3-221ENST00000561442 CCDC24Q8N4L8 307 aa18.4■□□□□ 0.54
USP3-221ENST00000561442 NLGN2Q8NFZ4 835 aa18.4■□□□□ 0.54
USP3-221ENST00000561442 BCORQ6W2J9 1755 aa18.4■□□□□ 0.54
USP3-221ENST00000561442 PLBD2Q8NHP8 589 aa18.39■□□□□ 0.53
USP3-221ENST00000561442 CD2APQ9Y5K6 639 aa18.39■□□□□ 0.53
USP3-221ENST00000561442 NPHP1O15259 732 aa18.38■□□□□ 0.53
USP3-221ENST00000561442 RIC3Q7Z5B4 369 aa18.38■□□□□ 0.53
USP3-221ENST00000561442 NBPF5PQ86XG9 351 aaPredicted RBP18.38■□□□□ 0.53
USP3-221ENST00000561442 ZNF428Q96B54 188 aa18.38■□□□□ 0.53
USP3-221ENST00000561442 C10orf71Q711Q0 1435 aa18.38■□□□□ 0.53
USP3-221ENST00000561442 ZNF34Q8IZ26 560 aa18.37■□□□□ 0.53
USP3-221ENST00000561442 CNBD1Q8NA66 436 aa18.37■□□□□ 0.53
USP3-221ENST00000561442 UBN2Q6ZU65 1347 aa18.37■□□□□ 0.53
USP3-221ENST00000561442 ATP10DQ9P241 1426 aa18.37■□□□□ 0.53
USP3-221ENST00000561442 ATP5J2-PTCD1G3V325 749 aa18.36■□□□□ 0.53
USP3-221ENST00000561442 DDX58O95786 925 aaKnown RBP18.36■□□□□ 0.53
USP3-221ENST00000561442 FLIIQ13045 1269 aa18.36■□□□□ 0.53
USP3-221ENST00000561442 TCIRG1Q13488 830 aa18.36■□□□□ 0.53
USP3-221ENST00000561442 HSP90AB3PQ58FF7 597 aa18.36■□□□□ 0.53
USP3-221ENST00000561442 PRR5LQ6MZQ0 368 aa18.36■□□□□ 0.53
USP3-221ENST00000561442 YTHDC1Q96MU7 727 aaKnown RBP18.36■□□□□ 0.53
USP3-221ENST00000561442 BCL2L13Q9BXK5 485 aa18.35■□□□□ 0.53
USP3-221ENST00000561442 WWC3Q9ULE0 1092 aa18.35■□□□□ 0.53
USP3-221ENST00000561442 PI4KAP2A4QPH2 592 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 FKBP5Q13451 457 aaPredicted RBP18.34■□□□□ 0.53
USP3-221ENST00000561442 SUSD4Q5VX71 490 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 PI4KAP1Q8N8J0 262 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 SSH1Q8WYL5 1049 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 MYD88Q99836 296 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 MAP3K2Q9Y2U5 619 aa18.34■□□□□ 0.53
USP3-221ENST00000561442 GOLGB1Q14789 3259 aaKnown RBP18.34■□□□□ 0.53
USP3-221ENST00000561442 A0A0G2JLW4 131 aa18.33■□□□□ 0.52
USP3-221ENST00000561442 GTF2E1P29083 439 aaPredicted RBP18.33■□□□□ 0.52
USP3-221ENST00000561442 ST5P78524 1137 aa18.33■□□□□ 0.52
USP3-221ENST00000561442 KSR2Q6VAB6 950 aa18.33■□□□□ 0.52
USP3-221ENST00000561442 NLRP10Q86W26 655 aa18.33■□□□□ 0.52
USP3-221ENST00000561442 NUTM1Q86Y26 1132 aa18.33■□□□□ 0.52
USP3-221ENST00000561442 MRPL50Q8N5N7 158 aaKnown RBP18.33■□□□□ 0.52
USP3-221ENST00000561442 ADCY9O60503 1353 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 CT47B1P0C2W7 299 aaPredicted RBP18.32■□□□□ 0.52
USP3-221ENST00000561442 DPEP1P16444 411 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 CHRNA5P30532 468 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 PARP10Q53GL7 1025 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 TPTE2Q6XPS3 522 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 PELP1Q8IZL8 1130 aaKnown RBP18.32■□□□□ 0.52
USP3-221ENST00000561442 ISCA1Q9BUE6 129 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 NYXQ9GZU5 481 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 SMC4Q9NTJ3 1288 aa18.32■□□□□ 0.52
USP3-221ENST00000561442 NTSR2O95665 410 aa18.31■□□□□ 0.52
USP3-221ENST00000561442 ERFEQ4G0M1 354 aa18.31■□□□□ 0.52
USP3-221ENST00000561442 PPP1R42Q7Z4L9 355 aa18.31■□□□□ 0.52
USP3-221ENST00000561442 METTL22Q9BUU2 404 aaPredicted RBP18.31■□□□□ 0.52
USP3-221ENST00000561442 UTP14AQ9BVJ6 771 aaKnown RBP18.31■□□□□ 0.52
USP3-221ENST00000561442 PXDNLA1KZ92 1463 aa18.31■□□□□ 0.52
USP3-221ENST00000561442 F6X3S4 739 aa18.3■□□□□ 0.52
USP3-221ENST00000561442 TGFB2P61812 414 aa18.3■□□□□ 0.52
USP3-221ENST00000561442 BRIP1Q9BX63 1249 aa18.3■□□□□ 0.52
USP3-221ENST00000561442 ABCC12Q96J65 1359 aa18.3■□□□□ 0.52
USP3-221ENST00000561442 NRXN2Q9P2S2 1712 aa18.29■□□□□ 0.52
USP3-221ENST00000561442 ALDH1L2Q3SY69 923 aa18.29■□□□□ 0.52
USP3-221ENST00000561442 C2CD5Q86YS7 1000 aa18.29■□□□□ 0.52
USP3-221ENST00000561442 TRMT112Q9UI30 125 aaKnown RBP18.29■□□□□ 0.52
USP3-221ENST00000561442 NUP98P52948 1817 aa18.28■□□□□ 0.52
USP3-221ENST00000561442 RARSP54136 660 aaKnown RBP18.28■□□□□ 0.52
USP3-221ENST00000561442 SYNE4Q8N205 404 aa18.28■□□□□ 0.52
USP3-221ENST00000561442 DNAAF4Q8WXU2 420 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms