RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 LAMB4A4D0S4 1761 aa18.57■□□□□ 0.56
LDLR-213ENST00000560502 POTECB2RU33 542 aa18.56■□□□□ 0.56
LDLR-213ENST00000560502 C21orf2O43822 256 aa18.56■□□□□ 0.56
LDLR-213ENST00000560502 DZIP3Q86Y13 1208 aaKnown RBP18.56■□□□□ 0.56
LDLR-213ENST00000560502 SETDB2Q96T68 719 aa18.56■□□□□ 0.56
LDLR-213ENST00000560502 USP16Q9Y5T5 823 aa18.56■□□□□ 0.56
LDLR-213ENST00000560502 PRAMEF22A3QJZ6 481 aa18.55■□□□□ 0.56
LDLR-213ENST00000560502 PPP2R1AP30153 589 aa18.55■□□□□ 0.56
LDLR-213ENST00000560502 STYK1Q6J9G0 422 aa18.55■□□□□ 0.56
LDLR-213ENST00000560502 DLG5Q8TDM6 1919 aa18.55■□□□□ 0.56
LDLR-213ENST00000560502 MYBBP1AQ9BQG0 1328 aaKnown RBP18.54■□□□□ 0.56
LDLR-213ENST00000560502 SRGNP10124 158 aa18.54■□□□□ 0.56
LDLR-213ENST00000560502 NUDCQ9Y266 331 aa18.54■□□□□ 0.56
LDLR-213ENST00000560502 KDM3BQ7LBC6 1761 aa18.53■□□□□ 0.56
LDLR-213ENST00000560502 CENPBP07199 599 aaPredicted RBP18.53■□□□□ 0.56
LDLR-213ENST00000560502 PIP4K2AP48426 406 aaPredicted RBP18.53■□□□□ 0.56
LDLR-213ENST00000560502 ST5P78524 1137 aa18.53■□□□□ 0.56
LDLR-213ENST00000560502 PRPF40BQ6NWY9 871 aaKnown RBP18.53■□□□□ 0.56
LDLR-213ENST00000560502 CLEC4GQ6UXB4 293 aa18.53■□□□□ 0.56
LDLR-213ENST00000560502 MCM10Q7L590 875 aa18.53■□□□□ 0.56
LDLR-213ENST00000560502 NPM2Q86SE8 214 aaKnown RBP18.53■□□□□ 0.56
LDLR-213ENST00000560502 CNKSR1Q969H4 720 aa18.53■□□□□ 0.56
LDLR-213ENST00000560502 ZNF219Q9P2Y4 722 aaPredicted RBP18.53■□□□□ 0.56
LDLR-213ENST00000560502 RGL2O15211 777 aa18.52■□□□□ 0.56
LDLR-213ENST00000560502 SNRPA1P09661 255 aaKnown RBP18.52■□□□□ 0.56
LDLR-213ENST00000560502 U2AF1L5P0DN76 240 aaPredicted RBP18.52■□□□□ 0.56
LDLR-213ENST00000560502 U2AF1Q01081 240 aaKnown RBP eCLIP18.52■□□□□ 0.56
LDLR-213ENST00000560502 ERFEQ4G0M1 354 aa18.52■□□□□ 0.56
LDLR-213ENST00000560502 TAOK3Q9H2K8 898 aa18.52■□□□□ 0.56
LDLR-213ENST00000560502 NBPF26B4DH59 902 aa18.51■□□□□ 0.55
LDLR-213ENST00000560502 HTATSF1O43719 755 aaKnown RBP18.51■□□□□ 0.55
LDLR-213ENST00000560502 NBPF10Q6P3W6 841 aaKnown RBP18.51■□□□□ 0.55
LDLR-213ENST00000560502 NBPF15Q8N660 670 aa18.51■□□□□ 0.55
LDLR-213ENST00000560502 MASTLQ96GX5 879 aa18.51■□□□□ 0.55
LDLR-213ENST00000560502 SOGA3Q5TF21 947 aa18.5■□□□□ 0.55
LDLR-213ENST00000560502 DPY19L2Q6NUT2 758 aa18.5■□□□□ 0.55
LDLR-213ENST00000560502 C7orf43Q8WVR3 580 aa18.5■□□□□ 0.55
LDLR-213ENST00000560502 RTF1Q92541 710 aaKnown RBP18.5■□□□□ 0.55
LDLR-213ENST00000560502 SCN4AP35499 1836 aa18.49■□□□□ 0.55
LDLR-213ENST00000560502 KLRG2A4D1S0 409 aaPredicted RBP18.49■□□□□ 0.55
LDLR-213ENST00000560502 DCTN1Q14203 1278 aa18.49■□□□□ 0.55
LDLR-213ENST00000560502 ZNF652Q9Y2D9 606 aa18.49■□□□□ 0.55
LDLR-213ENST00000560502 NPHP1O15259 732 aa18.48■□□□□ 0.55
LDLR-213ENST00000560502 NBPF5PQ86XG9 351 aaPredicted RBP18.48■□□□□ 0.55
LDLR-213ENST00000560502 NUP98P52948 1817 aa18.47■□□□□ 0.55
LDLR-213ENST00000560502 NPR1P16066 1061 aa18.46■□□□□ 0.55
LDLR-213ENST00000560502 COL13A1Q5TAT6 717 aaPredicted RBP18.46■□□□□ 0.55
LDLR-213ENST00000560502 MRS2Q9HD23 443 aa18.46■□□□□ 0.55
LDLR-213ENST00000560502 DDNO94850 711 aaPredicted RBP18.45■□□□□ 0.54
LDLR-213ENST00000560502 TAF7Q15545 349 aaPredicted RBP18.45■□□□□ 0.54
LDLR-213ENST00000560502 CCDC93Q567U6 631 aa18.45■□□□□ 0.54
LDLR-213ENST00000560502 NIP7Q9Y221 180 aaKnown RBP eCLIP18.45■□□□□ 0.54
LDLR-213ENST00000560502 SNED1Q8TER0 1413 aa18.45■□□□□ 0.54
LDLR-213ENST00000560502 CHADLQ6NUI6 762 aa18.44■□□□□ 0.54
LDLR-213ENST00000560502 TPTE2Q6XPS3 522 aa18.44■□□□□ 0.54
LDLR-213ENST00000560502 L3MBTL3Q96JM7 780 aaPredicted RBP18.44■□□□□ 0.54
LDLR-213ENST00000560502 ADAMTSL1Q8N6G6 1762 aa18.44■□□□□ 0.54
LDLR-213ENST00000560502 PCNTO95613 3336 aa18.44■□□□□ 0.54
LDLR-213ENST00000560502 POTEIP0CG38 1075 aa18.43■□□□□ 0.54
LDLR-213ENST00000560502 POTEJP0CG39 1038 aa18.43■□□□□ 0.54
LDLR-213ENST00000560502 HLFQ16534 295 aa18.43■□□□□ 0.54
LDLR-213ENST00000560502 FKBP4Q02790 459 aaKnown RBP eCLIP18.42■□□□□ 0.54
LDLR-213ENST00000560502 MIS18AQ9NYP9 233 aa18.42■□□□□ 0.54
LDLR-213ENST00000560502 ABCC12Q96J65 1359 aa18.42■□□□□ 0.54
LDLR-213ENST00000560502 YTHDC1Q96MU7 727 aaKnown RBP18.41■□□□□ 0.54
LDLR-213ENST00000560502 RIC1Q4ADV7 1423 aa18.4■□□□□ 0.54
LDLR-213ENST00000560502 HSPA1AP0DMV8 641 aaKnown RBP18.4■□□□□ 0.54
LDLR-213ENST00000560502 HSPA1BP0DMV9 641 aaKnown RBP18.4■□□□□ 0.54
LDLR-213ENST00000560502 OLFM4Q6UX06 510 aa18.4■□□□□ 0.54
LDLR-213ENST00000560502 PLEKHF1Q96S99 279 aa18.4■□□□□ 0.54
LDLR-213ENST00000560502 CREBZFQ9NS37 354 aa18.4■□□□□ 0.54
LDLR-213ENST00000560502 ZNF541Q9H0D2 1346 aa18.4■□□□□ 0.54
LDLR-213ENST00000560502 IBTKQ9P2D0 1353 aaPredicted RBP18.4■□□□□ 0.54
LDLR-213ENST00000560502 IQCA1LA6NCM1 817 aa18.39■□□□□ 0.53
LDLR-213ENST00000560502 ERVV-1B6SEH8 477 aa18.39■□□□□ 0.53
LDLR-213ENST00000560502 CRY2Q49AN0 593 aa18.39■□□□□ 0.53
LDLR-213ENST00000560502 PNISRQ8TF01 805 aaKnown RBP18.39■□□□□ 0.53
LDLR-213ENST00000560502 TAF1DQ9H5J8 278 aaPredicted RBP18.39■□□□□ 0.53
LDLR-213ENST00000560502 ZNF277Q9NRM2 450 aaPredicted RBP18.39■□□□□ 0.53
LDLR-213ENST00000560502 PASKQ96RG2 1323 aa18.39■□□□□ 0.53
LDLR-213ENST00000560502 FAM177BA6PVY3 158 aa18.38■□□□□ 0.53
LDLR-213ENST00000560502 EIF4A1P60842 406 aaKnown RBP18.38■□□□□ 0.53
LDLR-213ENST00000560502 LDHDQ86WU2 507 aa18.38■□□□□ 0.53
LDLR-213ENST00000560502 RTKN2Q8IZC4 609 aa18.38■□□□□ 0.53
LDLR-213ENST00000560502 MAP3K15Q6ZN16 1313 aa18.38■□□□□ 0.53
LDLR-213ENST00000560502 ALDH1B1P30837 517 aa18.37■□□□□ 0.53
LDLR-213ENST00000560502 COL4A5P29400 1685 aa18.37■□□□□ 0.53
LDLR-213ENST00000560502 IARSP41252 1262 aaKnown RBP18.36■□□□□ 0.53
LDLR-213ENST00000560502 NFE2L2Q16236 605 aa18.36■□□□□ 0.53
LDLR-213ENST00000560502 TTLL7Q6ZT98 887 aa18.36■□□□□ 0.53
LDLR-213ENST00000560502 THUMPD2Q9BTF0 503 aaKnown RBP18.36■□□□□ 0.53
LDLR-213ENST00000560502 NYXQ9GZU5 481 aa18.36■□□□□ 0.53
LDLR-213ENST00000560502 UBN2Q6ZU65 1347 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 FZD9O00144 591 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 CCDC184Q52MB2 194 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 NUTM1Q86Y26 1132 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 TNS4Q8IZW8 715 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 PSMD1Q99460 953 aa18.35■□□□□ 0.53
LDLR-213ENST00000560502 CNTNAP1P78357 1384 aa18.34■□□□□ 0.53
LDLR-213ENST00000560502 ITGBL1O95965 494 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms