RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HDGFL1Q5TGJ6 251 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 TBC1D9BQ66K14 1250 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 C8orf58Q8NAV2 365 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 NECTIN2Q92692 538 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 KIF13BQ9NQT8 1826 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 FANCIQ9NVI1 1328 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 ANXA1P04083 346 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 YBX3P16989 372 aaKnown RBP eCLIP12.13□□□□□ -0.47
LDLR-211ENST00000560173 CLEC4GQ6UXB4 293 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 TTLL7Q6ZT98 887 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 DDX21Q9NR30 783 aaKnown RBP eCLIP12.13□□□□□ -0.47
LDLR-211ENST00000560173 CHPF2Q9P2E5 772 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 ZNF652Q9Y2D9 606 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 NRXN2Q9P2S2 1712 aa12.13□□□□□ -0.47
LDLR-211ENST00000560173 MAP3K15Q6ZN16 1313 aa12.12□□□□□ -0.47
LDLR-211ENST00000560173 KIF6Q6ZMV9 814 aa12.12□□□□□ -0.47
LDLR-211ENST00000560173 BICDL1Q6ZP65 573 aa12.12□□□□□ -0.47
LDLR-211ENST00000560173 SPINK5Q9NQ38 1064 aaPredicted RBP12.12□□□□□ -0.47
LDLR-211ENST00000560173 CARMIL3Q8ND23 1372 aa12.12□□□□□ -0.47
LDLR-211ENST00000560173 PXDNLA1KZ92 1463 aa12.12□□□□□ -0.47
LDLR-211ENST00000560173 KIAA1551Q9HCM1 1747 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 ERVV-1B6SEH8 477 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 ELL2O00472 640 aaPredicted RBP12.11□□□□□ -0.47
LDLR-211ENST00000560173 GRIN3BO60391 1043 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 SERPINB2P05120 415 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 HLFQ16534 295 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 TSPYL6Q8N831 410 aa12.11□□□□□ -0.47
LDLR-211ENST00000560173 AFDNP55196 1824 aaKnown RBP12.11□□□□□ -0.47
LDLR-211ENST00000560173 XAGE3Q8WTP9 111 aa12.1□□□□□ -0.47
LDLR-211ENST00000560173 SETDB2Q96T68 719 aa12.1□□□□□ -0.47
LDLR-211ENST00000560173 ZBTB3Q9H5J0 574 aa12.1□□□□□ -0.47
LDLR-211ENST00000560173 GPBP1L1Q9HC44 474 aaPredicted RBP12.1□□□□□ -0.47
LDLR-211ENST00000560173 DBF4Q9UBU7 674 aaPredicted RBP12.1□□□□□ -0.47
LDLR-211ENST00000560173 TGFB2P61812 414 aa12.09□□□□□ -0.47
LDLR-211ENST00000560173 TWISTNBQ3B726 338 aaPredicted RBP12.09□□□□□ -0.47
LDLR-211ENST00000560173 PRR5LQ6MZQ0 368 aa12.09□□□□□ -0.47
LDLR-211ENST00000560173 COPS6Q7L5N1 327 aa12.09□□□□□ -0.47
LDLR-211ENST00000560173 MYH16Q9H6N6 1097 aa12.09□□□□□ -0.47
LDLR-211ENST00000560173 HYPKQ9NX55 129 aa12.09□□□□□ -0.47
LDLR-211ENST00000560173 NIP7Q9Y221 180 aaKnown RBP eCLIP12.09□□□□□ -0.47
LDLR-211ENST00000560173 ADCY9O60503 1353 aa12.08□□□□□ -0.48
LDLR-211ENST00000560173 GOLGA2Q08379 1002 aa12.08□□□□□ -0.48
LDLR-211ENST00000560173 CCDC30Q5VVM6 783 aa12.08□□□□□ -0.48
LDLR-211ENST00000560173 GIGYF2Q6Y7W6 1299 aaKnown RBP12.08□□□□□ -0.48
LDLR-211ENST00000560173 CHMP4AQ9BY43 222 aa12.08□□□□□ -0.48
LDLR-211ENST00000560173 NUP98P52948 1817 aa12.07□□□□□ -0.48
LDLR-211ENST00000560173 A0A0G2JLW4 131 aa12.07□□□□□ -0.48
LDLR-211ENST00000560173 DPEP1P16444 411 aa12.07□□□□□ -0.48
LDLR-211ENST00000560173 EXOSC9Q06265 439 aaKnown RBP12.07□□□□□ -0.48
LDLR-211ENST00000560173 AIMP1Q12904 312 aaKnown RBP12.07□□□□□ -0.48
LDLR-211ENST00000560173 NBPF5PQ86XG9 351 aaPredicted RBP12.07□□□□□ -0.48
LDLR-211ENST00000560173 CNBD1Q8NA66 436 aa12.07□□□□□ -0.48
LDLR-211ENST00000560173 UBN2Q6ZU65 1347 aa12.07□□□□□ -0.48
LDLR-211ENST00000560173 IBTKQ9P2D0 1353 aaPredicted RBP12.06□□□□□ -0.48
LDLR-211ENST00000560173 N4BP2Q86UW6 1770 aaPredicted RBP12.06□□□□□ -0.48
LDLR-211ENST00000560173 E9PSI1 815 aa12.06□□□□□ -0.48
LDLR-211ENST00000560173 GPTP24298 496 aa12.06□□□□□ -0.48
LDLR-211ENST00000560173 ZNF34Q8IZ26 560 aa12.06□□□□□ -0.48
LDLR-211ENST00000560173 ZNF526Q8TF50 670 aaPredicted RBP12.06□□□□□ -0.48
LDLR-211ENST00000560173 ANKRD31Q8N7Z5 1873 aa12.06□□□□□ -0.48
LDLR-211ENST00000560173 VAMP4O75379 141 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 KCNA3P22001 575 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 CHRNA5P30532 468 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 ST5P78524 1137 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 CCDC24Q8N4L8 307 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 PLBD2Q8NHP8 589 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 BRIP1Q9BX63 1249 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 PHAXQ9H814 394 aaKnown RBP12.05□□□□□ -0.48
LDLR-211ENST00000560173 WWC3Q9ULE0 1092 aa12.05□□□□□ -0.48
LDLR-211ENST00000560173 BRCA1P38398 1863 aaKnown RBP12.04□□□□□ -0.48
LDLR-211ENST00000560173 FAM177BA6PVY3 158 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 TCERG1O14776 1098 aaKnown RBP12.04□□□□□ -0.48
LDLR-211ENST00000560173 SLFN5Q08AF3 891 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 PARP10Q53GL7 1025 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 HSP90AB3PQ58FF7 597 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 TPTE2Q6XPS3 522 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 ANKRD13DQ6ZTN6 518 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 STK31Q9BXU1 1019 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 ANKRD36CQ5JPF3 1778 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 ABCC12Q96J65 1359 aa12.04□□□□□ -0.48
LDLR-211ENST00000560173 COL11A2P13942 1736 aaPredicted RBP12.03□□□□□ -0.48
LDLR-211ENST00000560173 DLEC1Q9Y238 1755 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 NPHP1O15259 732 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 NTSR2O95665 410 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 PDE6BP35913 854 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 TCIRG1Q13488 830 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 SUSD4Q5VX71 490 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 C2CD5Q86YS7 1000 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 CDCA7LQ96GN5 454 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 NYXQ9GZU5 481 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 RIC1Q4ADV7 1423 aa12.03□□□□□ -0.48
LDLR-211ENST00000560173 ARFGEF2Q9Y6D5 1785 aa12.02□□□□□ -0.48
LDLR-211ENST00000560173 H0YIN7 160 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 G2E3Q7L622 706 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 NLRP10Q86W26 655 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 NUTM1Q86Y26 1132 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 TRMT2AQ8IZ69 625 aaKnown RBP12.02□□□□□ -0.49
LDLR-211ENST00000560173 ISCA1Q9BUE6 129 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 PIM2Q9P1W9 311 aa12.02□□□□□ -0.49
LDLR-211ENST00000560173 PDZRN3Q9UPQ7 1066 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms