RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FSD1Q9BTV5 496 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 ISM2Q6H9L7 571 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 FAM177A1Q8N128 213 aaPredicted RBP13.44□□□□□ -0.26
LDLR-208ENST00000558518 EDC3Q96F86 508 aaKnown RBP13.44□□□□□ -0.26
LDLR-208ENST00000558518 SLC26A8Q96RN1 970 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 TMX1Q9H3N1 280 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 USP16Q9Y5T5 823 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 ABCC3O15438 1527 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 ADGRB3O60242 1522 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 RGS12O14924 1447 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 LARP1Q6PKG0 1096 aaKnown RBP13.44□□□□□ -0.26
LDLR-208ENST00000558518 OSBPL3Q9H4L5 887 aa13.44□□□□□ -0.26
LDLR-208ENST00000558518 ZRSR1Q15695 479 aaKnown RBP13.44□□□□□ -0.26
LDLR-208ENST00000558518 RAD50Q92878 1312 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 NLRP6P59044 892 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 KLHDC4Q8TBB5 520 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 RBM8AQ9Y5S9 174 aaKnown RBP13.43□□□□□ -0.26
LDLR-208ENST00000558518 CD163L1Q9NR16 1453 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 ACEP12821 1306 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 NR1I2O75469 434 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 NCBP1Q09161 790 aaKnown RBP13.43□□□□□ -0.26
LDLR-208ENST00000558518 ST7Q9NRC1 585 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 TPCN1Q9ULQ1 816 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 JAK2O60674 1132 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 RUFY2Q8WXA3 655 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 KIF1BPQ96EK5 621 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 ZFP91Q96JP5 570 aaPredicted RBP13.43□□□□□ -0.26
LDLR-208ENST00000558518 FTOQ9C0B1 505 aaKnown RBP eCLIP13.43□□□□□ -0.26
LDLR-208ENST00000558518 MRVI1Q9Y6F6 885 aa13.43□□□□□ -0.26
LDLR-208ENST00000558518 NRXN1Q9ULB1 1477 aa13.42□□□□□ -0.26
LDLR-208ENST00000558518 LSG1Q9H089 658 aaKnown RBP13.42□□□□□ -0.26
LDLR-208ENST00000558518 HYPKQ9NX55 129 aa13.42□□□□□ -0.26
LDLR-208ENST00000558518 KNDC1Q76NI1 1749 aa13.42□□□□□ -0.26
LDLR-208ENST00000558518 USP27XA6NNY8 438 aa13.42□□□□□ -0.26
LDLR-208ENST00000558518 BLOC1S2Q6QNY1 142 aa13.42□□□□□ -0.26
LDLR-208ENST00000558518 CACTINQ8WUQ7 758 aaKnown RBP13.42□□□□□ -0.26
LDLR-208ENST00000558518 MAP2P11137 1827 aaKnown RBP13.42□□□□□ -0.26
LDLR-208ENST00000558518 BIN1O00499 593 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 CEP135Q66GS9 1140 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 STK11IPQ8N1F8 1099 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 RBM33Q96EV2 1170 aaKnown RBP13.41□□□□□ -0.26
LDLR-208ENST00000558518 EYA1Q99502 592 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 CHPF2Q9P2E5 772 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 TAF6LQ9Y6J9 622 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 PTPN21Q16825 1174 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 ZSCAN25Q6NSZ9 544 aa13.41□□□□□ -0.26
LDLR-208ENST00000558518 GTPBP4Q9BZE4 634 aaKnown RBP13.41□□□□□ -0.26
LDLR-208ENST00000558518 ELF2Q15723 593 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 CWF19L2Q2TBE0 894 aaKnown RBP13.4□□□□□ -0.26
LDLR-208ENST00000558518 CCDC144BQ3MJ40 725 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 HOMER1Q86YM7 354 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 RAB11FIP4Q86YS3 637 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 CCDC144CPQ8IYA2 1237 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 DNAJC2Q99543 621 aaKnown RBP13.4□□□□□ -0.26
LDLR-208ENST00000558518 CCT2P78371 535 aaKnown RBP13.4□□□□□ -0.26
LDLR-208ENST00000558518 PTPN14Q15678 1187 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 GTF3C6Q969F1 213 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 ZNF215Q9UL58 517 aaPredicted RBP13.4□□□□□ -0.26
LDLR-208ENST00000558518 SMC2O95347 1197 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 CHGBP05060 677 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 SKILP12757 684 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 PLCD3Q8N3E9 789 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 SPTLC3Q9NUV7 552 aa13.4□□□□□ -0.26
LDLR-208ENST00000558518 KCNQ3O43525 872 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 NMIQ13287 307 aaPredicted RBP13.39□□□□□ -0.27
LDLR-208ENST00000558518 SETBP1Q9Y6X0 1596 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 TTC21BQ7Z4L5 1316 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 ZC3H13Q5T200 1668 aaKnown RBP13.39□□□□□ -0.27
LDLR-208ENST00000558518 GNAT3A8MTJ3 354 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 POLR3GO15318 223 aaPredicted RBP13.39□□□□□ -0.27
LDLR-208ENST00000558518 CCAR2Q8N163 923 aaKnown RBP13.39□□□□□ -0.27
LDLR-208ENST00000558518 PI4K2BQ8TCG2 481 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 GPATCH3Q96I76 525 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 ZNF75DP51815 510 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 TEFQ10587 303 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 HSP90AA4PQ58FG1 418 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 CREB3L3Q68CJ9 461 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 CHST3Q7LGC8 479 aa13.39□□□□□ -0.27
LDLR-208ENST00000558518 GLRX3O76003 335 aaKnown RBP13.38□□□□□ -0.27
LDLR-208ENST00000558518 TTC14Q96N46 770 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 SDF4Q9BRK5 362 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 TPM3P06753 285 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 ME1P48163 572 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 PIP4K2AP48426 406 aaPredicted RBP13.38□□□□□ -0.27
LDLR-208ENST00000558518 MROH1Q8NDA8 1641 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 CCDC129Q6ZRS4 1044 aa13.38□□□□□ -0.27
LDLR-208ENST00000558518 BRF1Q92994 677 aa13.37□□□□□ -0.27
LDLR-208ENST00000558518 G3BP1Q13283 466 aaKnown RBP eCLIP13.37□□□□□ -0.27
LDLR-208ENST00000558518 UTP14CQ5TAP6 766 aaKnown RBP13.37□□□□□ -0.27
LDLR-208ENST00000558518 PRR36Q9H6K5 1346 aa13.37□□□□□ -0.27
LDLR-208ENST00000558518 GNL2Q13823 731 aaKnown RBP13.37□□□□□ -0.27
LDLR-208ENST00000558518 MPRIPQ6WCQ1 1025 aa13.37□□□□□ -0.27
LDLR-208ENST00000558518 ECHDC1Q9NTX5 307 aa13.37□□□□□ -0.27
LDLR-208ENST00000558518 MYO3AQ8NEV4 1616 aa13.37□□□□□ -0.27
LDLR-208ENST00000558518 PTPRMP28827 1452 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 SF3A1Q15459 793 aaKnown RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 LEO1Q8WVC0 666 aaPredicted RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 TLR7Q9NYK1 1049 aaKnown RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 CCDC69A6NI79 296 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 SMTNL1A8MU46 457 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms