RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 C9orf78Q9NZ63 289 aaPredicted RBP20.84■□□□□ 0.93
LDLR-206ENST00000557958 ZNF330Q9Y3S2 320 aaPredicted RBP20.84■□□□□ 0.93
LDLR-206ENST00000557958 THSD7AQ9UPZ6 1657 aa20.83■□□□□ 0.93
LDLR-206ENST00000557958 RIC3Q7Z5B4 369 aa20.83■□□□□ 0.92
LDLR-206ENST00000557958 LAMB4A4D0S4 1761 aa20.83■□□□□ 0.92
LDLR-206ENST00000557958 SSH3Q8TE77 659 aa20.82■□□□□ 0.92
LDLR-206ENST00000557958 TBC1D32Q96NH3 1257 aa20.82■□□□□ 0.92
LDLR-206ENST00000557958 LRRCC1Q9C099 1032 aa20.82■□□□□ 0.92
LDLR-206ENST00000557958 RXRBP28702 533 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 PNMA6EA0A0J9YXQ4 647 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 APBB1O00213 710 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 COPS6Q7L5N1 327 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 XAGE3Q8WTP9 111 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 SLC4A9Q96Q91 983 aa20.81■□□□□ 0.92
LDLR-206ENST00000557958 RAB11FIP3O75154 756 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 NBPF7P0C2Y1 421 aaPredicted RBP20.8■□□□□ 0.92
LDLR-206ENST00000557958 ATP6V1AP38606 617 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 HSP90AB4PQ58FF6 505 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 TTC22Q5TAA0 569 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 VSIG10Q8N0Z9 540 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 ARXQ96QS3 562 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 TEX13AQ9BXU3 409 aaPredicted RBP20.8■□□□□ 0.92
LDLR-206ENST00000557958 PAPPAQ13219 1627 aa20.8■□□□□ 0.92
LDLR-206ENST00000557958 STARD3NLO95772 234 aa20.79■□□□□ 0.92
LDLR-206ENST00000557958 EXOC6BQ9Y2D4 811 aa20.79■□□□□ 0.92
LDLR-206ENST00000557958 UBR2Q8IWV8 1755 aa20.79■□□□□ 0.92
LDLR-206ENST00000557958 MFAP1P55081 439 aaKnown RBP20.79■□□□□ 0.92
LDLR-206ENST00000557958 POLA2Q14181 598 aa20.79■□□□□ 0.92
LDLR-206ENST00000557958 PPP1R42Q7Z4L9 355 aa20.79■□□□□ 0.92
LDLR-206ENST00000557958 NBPF26B4DH59 902 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 CDC45O75419 566 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 NBPF14Q5TI25 921 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 NBPF10Q6P3W6 841 aaKnown RBP20.78■□□□□ 0.92
LDLR-206ENST00000557958 ANKRD13DQ6ZTN6 518 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 NBPF15Q8N660 670 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 SMARCC1Q92922 1105 aaPredicted RBP20.78■□□□□ 0.92
LDLR-206ENST00000557958 PALLDQ8WX93 1383 aa20.78■□□□□ 0.92
LDLR-206ENST00000557958 LOC102724428A0A0B4J2F2 783 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 GRM8O00222 908 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 SRGAP3O43295 1099 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 SMARCA5O60264 1052 aaPredicted RBP20.77■□□□□ 0.92
LDLR-206ENST00000557958 SIK1P57059 783 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 MTX1Q13505 466 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 BECN1Q14457 450 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 RGS17Q9UGC6 210 aaPredicted RBP20.77■□□□□ 0.92
LDLR-206ENST00000557958 UTYO14607 1347 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 KCNQ4P56696 695 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 CASC1Q6TDU7 716 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 METTL22Q9BUU2 404 aaPredicted RBP20.77■□□□□ 0.92
LDLR-206ENST00000557958 OSBPL3Q9H4L5 887 aa20.77■□□□□ 0.92
LDLR-206ENST00000557958 C22orf23Q9BZE7 217 aa20.76■□□□□ 0.91
LDLR-206ENST00000557958 CWF19L2Q2TBE0 894 aaKnown RBP20.75■□□□□ 0.91
LDLR-206ENST00000557958 POTEAQ6S8J7 498 aa20.75■□□□□ 0.91
LDLR-206ENST00000557958 C16orf71Q8IYS4 520 aaPredicted RBP20.75■□□□□ 0.91
LDLR-206ENST00000557958 BCL11AQ9H165 835 aa20.75■□□□□ 0.91
LDLR-206ENST00000557958 FAM196AQ6ZSG2 479 aa20.75■□□□□ 0.91
LDLR-206ENST00000557958 LRP10Q7Z4F1 713 aa20.75■□□□□ 0.91
LDLR-206ENST00000557958 SURF6O75683 361 aaKnown RBP20.74■□□□□ 0.91
LDLR-206ENST00000557958 CYP19A1P11511 503 aaPredicted RBP20.74■□□□□ 0.91
LDLR-206ENST00000557958 GSPT1P15170 499 aaKnown RBP20.74■□□□□ 0.91
LDLR-206ENST00000557958 TBC1D9Q6ZT07 1266 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 PLBD2Q8NHP8 589 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 NEURL1BA8MQ27 555 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 TRIM37O94972 964 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 PDE1AP54750 535 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 TTLL7Q6ZT98 887 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 KIF1BPQ96EK5 621 aa20.73■□□□□ 0.91
LDLR-206ENST00000557958 ITPK1Q13572 414 aa20.72■□□□□ 0.91
LDLR-206ENST00000557958 OTUD7AQ8TE49 926 aaPredicted RBP20.72■□□□□ 0.91
LDLR-206ENST00000557958 MYD88Q99836 296 aa20.72■□□□□ 0.91
LDLR-206ENST00000557958 AOX1Q06278 1338 aa20.72■□□□□ 0.91
LDLR-206ENST00000557958 IGKV5-2P06315 115 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 MX1P20591 662 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 GCKRQ14397 625 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 ZBTB1Q9Y2K1 713 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 ERC1Q8IUD2 1116 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 ZBTB3Q9H5J0 574 aa20.71■□□□□ 0.91
LDLR-206ENST00000557958 BCL11BQ9C0K0 894 aaPredicted RBP20.7■□□□□ 0.9
LDLR-206ENST00000557958 OS9Q13438 667 aaPredicted RBP20.69■□□□□ 0.9
LDLR-206ENST00000557958 RHPN1Q8TCX5 695 aa20.69■□□□□ 0.9
LDLR-206ENST00000557958 CRKLP46109 303 aaKnown RBP20.69■□□□□ 0.9
LDLR-206ENST00000557958 RBM25P49756 843 aaKnown RBP20.69■□□□□ 0.9
LDLR-206ENST00000557958 STAP2Q9UGK3 403 aa20.69■□□□□ 0.9
LDLR-206ENST00000557958 BRWD3Q6RI45 1802 aa20.68■□□□□ 0.9
LDLR-206ENST00000557958 SALL3Q9BXA9 1300 aa20.68■□□□□ 0.9
LDLR-206ENST00000557958 SDSP20132 328 aa20.68■□□□□ 0.9
LDLR-206ENST00000557958 CCNL1Q9UK58 526 aaPredicted RBP20.68■□□□□ 0.9
LDLR-206ENST00000557958 ATP5J2-PTCD1G3V325 749 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 KIF6Q6ZMV9 814 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 SUCLG2Q96I99 432 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 CCDC87Q9NVE4 849 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 ARFGEF2Q9Y6D5 1785 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 COL15A1P39059 1388 aa20.67■□□□□ 0.9
LDLR-206ENST00000557958 INTS5Q6P9B9 1019 aaKnown RBP20.66■□□□□ 0.9
LDLR-206ENST00000557958 BICC1Q9H694 974 aaKnown RBP20.66■□□□□ 0.9
LDLR-206ENST00000557958 LINC00116Q8NCU8 138 aa20.65■□□□□ 0.9
LDLR-206ENST00000557958 TBC1D2BQ9UPU7 963 aa20.65■□□□□ 0.9
LDLR-206ENST00000557958 NHSQ6T4R5 1651 aa20.65■□□□□ 0.9
LDLR-206ENST00000557958 BTAF1O14981 1849 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms