RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZSCAN22P10073 491 aaPredicted RBP14.82□□□□□ -0.04
LDLR-205ENST00000557933 LRMPQ12912 555 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 NAA30Q147X3 362 aaPredicted RBP14.82□□□□□ -0.04
LDLR-205ENST00000557933 TAF6LQ9Y6J9 622 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 MARF1Q9Y4F3 1742 aaKnown RBP14.82□□□□□ -0.04
LDLR-205ENST00000557933 ATP2B3Q16720 1220 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 PPP4R3BQ5MIZ7 849 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 LUZP1Q86V48 1076 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 NDUFB9Q9Y6M9 179 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 KCNJ4P48050 445 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 NGDNQ8NEJ9 315 aaKnown RBP14.81□□□□□ -0.04
LDLR-205ENST00000557933 RHPN1Q8TCX5 695 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 CRB1P82279 1406 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 HSPA4P34932 840 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 CEBPZQ03701 1054 aaKnown RBP14.81□□□□□ -0.04
LDLR-205ENST00000557933 TAF7Q15545 349 aaPredicted RBP14.81□□□□□ -0.04
LDLR-205ENST00000557933 CCDC183Q5T5S1 534 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 KCNF1Q9H3M0 494 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.81□□□□□ -0.04
LDLR-205ENST00000557933 AATKQ6ZMQ8 1374 aa14.81□□□□□ -0.04
LDLR-205ENST00000557933 CHGBP05060 677 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 IL17REQ8NFR9 667 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 GNAI3P08754 354 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 SIL1Q9H173 461 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 NRBP1Q9UHY1 535 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 USP31Q70CQ4 1352 aa14.8□□□□□ -0.04
LDLR-205ENST00000557933 F13A1P00488 732 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PTGS1P23219 599 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 DDX11Q96FC9 970 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 TTC21AQ8NDW8 1320 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 TRPM3Q9HCF6 1732 aaPredicted RBP14.79□□□□□ -0.04
LDLR-205ENST00000557933 A0A0U1RQG5 324 aaPredicted RBP14.79□□□□□ -0.04
LDLR-205ENST00000557933 PI4KAP2A4QPH2 592 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 U2AF2P26368 475 aaKnown RBP eCLIP14.79□□□□□ -0.043e-6■■■□□ 15.4
LDLR-205ENST00000557933 MCM2P49736 904 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PI4KAP1Q8N8J0 262 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PIBF1Q8WXW3 757 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 OVOS2A0A0J9YW53 1432 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 OVOS2Q6IE36 1432 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PIK3C2AO00443 1686 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 SGSM2O43147 1006 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 LIG1P18858 919 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 NLRP6P59044 892 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 CCDC30Q5VVM6 783 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 DRC7Q8IY82 874 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 MYRIPQ8NFW9 859 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 KLHDC4Q8TBB5 520 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PI4K2BQ8TCG2 481 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 INTS4Q96HW7 963 aaKnown RBP14.79□□□□□ -0.04
LDLR-205ENST00000557933 C16orf45Q96MC5 204 aaPredicted RBP14.79□□□□□ -0.04
LDLR-205ENST00000557933 BCL2L12Q9HB09 334 aa14.79□□□□□ -0.04
LDLR-205ENST00000557933 PHRF1Q9P1Y6 1649 aaKnown RBP14.78□□□□□ -0.04
LDLR-205ENST00000557933 PHF14O94880 888 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 HAP1P54257 671 aaPredicted RBP14.78□□□□□ -0.04
LDLR-205ENST00000557933 EDC3Q96F86 508 aaKnown RBP14.78□□□□□ -0.04
LDLR-205ENST00000557933 FAM227BQ96M60 508 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 DIAPH3Q9NSV4 1193 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 CHPF2Q9P2E5 772 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 KIAA0232Q92628 1395 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 CDC37L1Q7L3B6 337 aa14.78□□□□□ -0.04
LDLR-205ENST00000557933 LSG1Q9H089 658 aaKnown RBP14.78□□□□□ -0.04
LDLR-205ENST00000557933 RIOK3O14730 519 aaKnown RBP14.77□□□□□ -0.04
LDLR-205ENST00000557933 KDM4AO75164 1064 aa14.77□□□□□ -0.04
LDLR-205ENST00000557933 ERCC4Q92889 916 aaPredicted RBP14.77□□□□□ -0.04
LDLR-205ENST00000557933 LGR6Q9HBX8 967 aa14.77□□□□□ -0.04
LDLR-205ENST00000557933 LIMCH1Q9UPQ0 1083 aa14.77□□□□□ -0.04
LDLR-205ENST00000557933 KIF24Q5T7B8 1368 aa14.77□□□□□ -0.05
LDLR-205ENST00000557933 PRAMEF22A3QJZ6 481 aa14.77□□□□□ -0.05
LDLR-205ENST00000557933 ME3Q16798 604 aa14.77□□□□□ -0.05
LDLR-205ENST00000557933 ZNF592Q92610 1267 aa14.77□□□□□ -0.05
LDLR-205ENST00000557933 CCDC8Q9H0W5 538 aaPredicted RBP14.77□□□□□ -0.05
LDLR-205ENST00000557933 RAD50Q92878 1312 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 ST3GAL1Q11201 340 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.76□□□□□ -0.05
LDLR-205ENST00000557933 V9GYY5 206 aaPredicted RBP14.76□□□□□ -0.05
LDLR-205ENST00000557933 MCM5P33992 734 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 UBE2HP62256 183 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 AIMP1Q12904 312 aaKnown RBP14.76□□□□□ -0.05
LDLR-205ENST00000557933 CWF19L2Q2TBE0 894 aaKnown RBP14.76□□□□□ -0.05
LDLR-205ENST00000557933 PDRG1Q9NUG6 133 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 TTC14Q96N46 770 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 LRRC2Q9BYS8 371 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 MTMR6Q9Y217 621 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 KIF3AQ9Y496 699 aa14.76□□□□□ -0.05
LDLR-205ENST00000557933 ANAPC15P60006 121 aa14.75□□□□□ -0.05
LDLR-205ENST00000557933 TTC6Q86TZ1 520 aa14.75□□□□□ -0.05
LDLR-205ENST00000557933 TERF1P54274 439 aa14.75□□□□□ -0.05
LDLR-205ENST00000557933 SYTL4Q96C24 671 aaPredicted RBP14.75□□□□□ -0.05
LDLR-205ENST00000557933 HYPKQ9NX55 129 aa14.75□□□□□ -0.05
LDLR-205ENST00000557933 GNAT3A8MTJ3 354 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 NPHP1O15259 732 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 CCDC94Q9BW85 323 aaPredicted RBP14.74□□□□□ -0.05
LDLR-205ENST00000557933 TLR7Q9NYK1 1049 aaKnown RBP14.74□□□□□ -0.05
LDLR-205ENST00000557933 TPCN1Q9ULQ1 816 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 C1orf167Q5SNV9 1468 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 PIP4K2AP48426 406 aaPredicted RBP14.74□□□□□ -0.05
LDLR-205ENST00000557933 LARP1BQ659C4 914 aaKnown RBP14.74□□□□□ -0.05
LDLR-205ENST00000557933 CCDC186Q7Z3E2 898 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 CNTROBQ8N137 903 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 C19orf44Q9H6X5 657 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms