RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SH3PXD2AQ5TCZ1 1133 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 CCDC102BQ68D86 513 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 LRRC69Q6ZNQ3 347 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 ZNF232Q9UNY5 417 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 SERTM1A2A2V5 107 aa8.58□□□□□ -1.04
SCFD1-219ENST00000556413 ATP9BO43861 1147 aa8.58□□□□□ -1.04
SCFD1-219ENST00000556413 ATP1A2P50993 1020 aa8.58□□□□□ -1.04
SCFD1-219ENST00000556413 OGFOD1Q8N543 542 aa8.57□□□□□ -1.04
SCFD1-219ENST00000556413 BAG6P46379 1132 aa8.56□□□□□ -1.04
SCFD1-219ENST00000556413 TSPAN10Q9H1Z9 355 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-219ENST00000556413 NOP53Q9NZM5 478 aaKnown RBP8.56□□□□□ -1.04
SCFD1-219ENST00000556413 MKRN1Q9UHC7 482 aaKnown RBP8.56□□□□□ -1.04
SCFD1-219ENST00000556413 GPC6Q9Y625 555 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-219ENST00000556413 PSMA6P60900 246 aaKnown RBP8.55□□□□□ -1.04
SCFD1-219ENST00000556413 SYT9Q86SS6 491 aa8.55□□□□□ -1.04
SCFD1-219ENST00000556413 LARGE2Q8N3Y3 721 aa8.55□□□□□ -1.04
SCFD1-219ENST00000556413 NEUROD4Q9HD90 331 aa8.55□□□□□ -1.04
SCFD1-219ENST00000556413 PALM3A6NDB9 673 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-219ENST00000556413 M0R2N6 131 aa8.54□□□□□ -1.04
SCFD1-219ENST00000556413 SFSWAPQ12872 951 aaKnown RBP8.54□□□□□ -1.04
SCFD1-219ENST00000556413 POTEAQ6S8J7 498 aa8.54□□□□□ -1.04
SCFD1-219ENST00000556413 RHPN1Q8TCX5 695 aa8.54□□□□□ -1.04
SCFD1-219ENST00000556413 TRIM11Q96F44 468 aa8.54□□□□□ -1.04
SCFD1-219ENST00000556413 HCN4Q9Y3Q4 1203 aa8.54□□□□□ -1.04
SCFD1-219ENST00000556413 ELOA3CA0A087WX78 387 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-219ENST00000556413 ELOA3DA6NLF2 546 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-219ENST00000556413 C1QTNF9BB2RNN3 333 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 DKK1O94907 266 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 HIRAP54198 1017 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-219ENST00000556413 ELOA3BQ3SY89 546 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 C1orf53Q5VUE5 145 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 CD163Q86VB7 1156 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 SIX5Q8N196 739 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 ELOA3Q8NG57 546 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 SLC30A3Q99726 388 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 MDFIQ99750 246 aa8.53□□□□□ -1.04
SCFD1-219ENST00000556413 TSEN2Q8NCE0 465 aaKnown RBP8.52□□□□□ -1.05
SCFD1-219ENST00000556413 PHACTR1Q9C0D0 580 aa8.52□□□□□ -1.05
SCFD1-219ENST00000556413 SFI1A8K8P3 1242 aa8.51□□□□□ -1.05
SCFD1-219ENST00000556413 K7ELQ4 463 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-219ENST00000556413 SIN3BO75182 1162 aa8.51□□□□□ -1.05
SCFD1-219ENST00000556413 CHRNA4P43681 627 aa8.51□□□□□ -1.05
SCFD1-219ENST00000556413 FNBP4Q8N3X1 1017 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-219ENST00000556413 CLUAP1Q96AJ1 413 aa8.51□□□□□ -1.05
SCFD1-219ENST00000556413 ZNF594Q96JF6 807 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-219ENST00000556413 PLVAPQ9BX97 442 aa8.51□□□□□ -1.05
SCFD1-219ENST00000556413 ADARB2-AS1A8MUL3 147 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 C21orf2O43822 256 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 FURINP09958 794 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 ALAS2P22557 587 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 HSH2DQ96JZ2 352 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 TFIP11Q9UBB9 837 aaKnown RBP8.5□□□□□ -1.05
SCFD1-219ENST00000556413 CHMP3Q9Y3E7 222 aa8.5□□□□□ -1.05
SCFD1-219ENST00000556413 ZNF280CQ8ND82 737 aa8.49□□□□□ -1.05
SCFD1-219ENST00000556413 GLMNQ92990 594 aa8.49□□□□□ -1.05
SCFD1-219ENST00000556413 CEP63Q96MT8 703 aa8.49□□□□□ -1.05
SCFD1-219ENST00000556413 BRD7Q9NPI1 651 aa8.49□□□□□ -1.05
SCFD1-219ENST00000556413 ANKIB1Q9P2G1 1089 aa8.49□□□□□ -1.05
SCFD1-219ENST00000556413 PPP1R12BO60237 982 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-219ENST00000556413 RASA1P20936 1047 aa8.48□□□□□ -1.05
SCFD1-219ENST00000556413 SPEM2Q0P670 501 aa8.48□□□□□ -1.05
SCFD1-219ENST00000556413 PROSER2Q86WR7 435 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-219ENST00000556413 TNFRSF25Q93038 417 aa8.48□□□□□ -1.05
SCFD1-219ENST00000556413 SUSD3Q96L08 255 aa8.48□□□□□ -1.05
SCFD1-219ENST00000556413 RBM19Q9Y4C8 960 aaKnown RBP8.48□□□□□ -1.05
SCFD1-219ENST00000556413 MAFBQ9Y5Q3 323 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-219ENST00000556413 KCNQ4P56696 695 aa8.47□□□□□ -1.05
SCFD1-219ENST00000556413 TYRO3Q06418 890 aa8.47□□□□□ -1.05
SCFD1-219ENST00000556413 RAB44Q7Z6P3 723 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-219ENST00000556413 ATAD2Q6PL18 1390 aa8.47□□□□□ -1.05
SCFD1-219ENST00000556413 SPATA31C1P0DKV0 1188 aa8.46□□□□□ -1.06
SCFD1-219ENST00000556413 ALDH16A1Q8IZ83 802 aa8.46□□□□□ -1.06
SCFD1-219ENST00000556413 STAG2Q8N3U4 1231 aa8.46□□□□□ -1.06
SCFD1-219ENST00000556413 C2orf49Q9BVC5 232 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-219ENST00000556413 KCNH4Q9UQ05 1017 aa8.46□□□□□ -1.06
SCFD1-219ENST00000556413 STARD13Q9Y3M8 1113 aa8.46□□□□□ -1.06
SCFD1-219ENST00000556413 M0R082 166 aa8.45□□□□□ -1.06
SCFD1-219ENST00000556413 SEC13P55735 322 aa8.45□□□□□ -1.06
SCFD1-219ENST00000556413 NEUROD1Q13562 356 aa8.45□□□□□ -1.06
SCFD1-219ENST00000556413 COL9A3Q14050 684 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-219ENST00000556413 ZNF417Q8TAU3 575 aa8.45□□□□□ -1.06
SCFD1-219ENST00000556413 SCG3Q8WXD2 468 aaKnown RBP8.45□□□□□ -1.06
SCFD1-219ENST00000556413 ZNF587Q96SQ5 575 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-219ENST00000556413 ADH7P40394 386 aa8.44□□□□□ -1.06
SCFD1-219ENST00000556413 PRDM6Q9NQX0 595 aa8.44□□□□□ -1.06
SCFD1-219ENST00000556413 ALBP02768 609 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 TMEM132AQ24JP5 1023 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 C8orf86Q6ZUL3 223 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 BTLAQ7Z6A9 289 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 MICALL1Q8N3F8 863 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 GAS2L2Q8NHY3 880 aa8.43□□□□□ -1.06
SCFD1-219ENST00000556413 CHMP7Q8WUX9 453 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-219ENST00000556413 SPDYE3A6NKU9 549 aa8.42□□□□□ -1.06
SCFD1-219ENST00000556413 PTK7Q13308 1070 aa8.42□□□□□ -1.06
SCFD1-219ENST00000556413 CRTC2Q53ET0 693 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-219ENST00000556413 KANK4Q5T7N3 995 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-219ENST00000556413 LARP1Q6PKG0 1096 aaKnown RBP8.42□□□□□ -1.06
SCFD1-219ENST00000556413 NGLY1Q96IV0 654 aa8.42□□□□□ -1.06
SCFD1-219ENST00000556413 PPP1R12CQ9BZL4 782 aa8.42□□□□□ -1.06
SCFD1-219ENST00000556413 LGR5O75473 907 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms