RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LIMCH1Q9UPQ0 1083 aa16.27■□□□□ 0.2
SHMT2-222ENST00000555774 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-222ENST00000555774 NPHP4O75161 1426 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-222ENST00000555774 KIF1AQ12756 1690 aa16.27■□□□□ 0.19
SHMT2-222ENST00000555774 TRPM3Q9HCF6 1732 aaPredicted RBP16.27■□□□□ 0.19
SHMT2-222ENST00000555774 KLHL34Q8N239 644 aa16.27■□□□□ 0.19
SHMT2-222ENST00000555774 KCNB2Q92953 911 aa16.27■□□□□ 0.19
SHMT2-222ENST00000555774 HIP1O00291 1037 aa16.26■□□□□ 0.19
SHMT2-222ENST00000555774 ANXA1P04083 346 aa16.26■□□□□ 0.19
SHMT2-222ENST00000555774 EVI5LQ96CN4 794 aa16.26■□□□□ 0.19
SHMT2-222ENST00000555774 TM6SF1Q9BZW5 370 aa16.26■□□□□ 0.19
SHMT2-222ENST00000555774 RPAP1Q9BWH6 1393 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-222ENST00000555774 PLEKHG2Q9H7P9 1386 aa16.26■□□□□ 0.19
SHMT2-222ENST00000555774 IFIT2P09913 472 aaKnown RBP16.25■□□□□ 0.19
SHMT2-222ENST00000555774 FOXD4L5Q5VV16 416 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-222ENST00000555774 CWC27Q6UX04 472 aaKnown RBP16.25■□□□□ 0.19
SHMT2-222ENST00000555774 FOXD4L4Q8WXT5 416 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-222ENST00000555774 DDX21Q9NR30 783 aaKnown RBP eCLIP16.25■□□□□ 0.19
SHMT2-222ENST00000555774 ABCC6O95255 1503 aa16.25■□□□□ 0.19
SHMT2-222ENST00000555774 SYCE3A1L190 88 aa16.25■□□□□ 0.19
SHMT2-222ENST00000555774 GRM8O00222 908 aa16.24■□□□□ 0.19
SHMT2-222ENST00000555774 AK2P54819 239 aa16.24■□□□□ 0.19
SHMT2-222ENST00000555774 NSFL1CQ9UNZ2 370 aaKnown RBP16.24■□□□□ 0.19
SHMT2-222ENST00000555774 MSNP26038 577 aaKnown RBP16.24■□□□□ 0.19
SHMT2-222ENST00000555774 PROSER3Q2NL68 480 aa16.24■□□□□ 0.19
SHMT2-222ENST00000555774 VPS53Q5VIR6 699 aa16.24■□□□□ 0.19
SHMT2-222ENST00000555774 RASEFQ8IZ41 740 aa16.24■□□□□ 0.19
SHMT2-222ENST00000555774 ZSCAN31Q96LW9 406 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-222ENST00000555774 ATP6V1DQ9Y5K8 247 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 ZSCAN22P10073 491 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-222ENST00000555774 RUFY3Q7L099 469 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 CHAMP1Q96JM3 812 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 ORAI2Q96SN7 254 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 TSPY26PQ9H489 355 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 SH2B1Q9NRF2 756 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-222ENST00000555774 SNRKQ9NRH2 765 aa16.23■□□□□ 0.19
SHMT2-222ENST00000555774 RBM33Q96EV2 1170 aaKnown RBP16.22■□□□□ 0.19
SHMT2-222ENST00000555774 MRC1P22897 1456 aa16.22■□□□□ 0.19
SHMT2-222ENST00000555774 PDIA4P13667 645 aaKnown RBP16.22■□□□□ 0.19
SHMT2-222ENST00000555774 MCM5P33992 734 aa16.22■□□□□ 0.19
SHMT2-222ENST00000555774 ZSWIM6Q9HCJ5 1215 aa16.22■□□□□ 0.19
SHMT2-222ENST00000555774 NOL7Q9UMY1 257 aaKnown RBP16.22■□□□□ 0.19
SHMT2-222ENST00000555774 SPG7Q9UQ90 795 aa16.22■□□□□ 0.19
SHMT2-222ENST00000555774 SMC3Q9UQE7 1217 aa16.22■□□□□ 0.19
SHMT2-222ENST00000555774 G3BP1Q13283 466 aaKnown RBP eCLIP16.21■□□□□ 0.192e-7■■■□□ 18
SHMT2-222ENST00000555774 CWF19L2Q2TBE0 894 aaKnown RBP16.21■□□□□ 0.19
SHMT2-222ENST00000555774 LARP1Q6PKG0 1096 aaKnown RBP16.21■□□□□ 0.19
SHMT2-222ENST00000555774 USP48Q86UV5 1035 aa16.21■□□□□ 0.19
SHMT2-222ENST00000555774 AACSQ86V21 672 aa16.21■□□□□ 0.19
SHMT2-222ENST00000555774 SUCLG2Q96I99 432 aa16.21■□□□□ 0.19
SHMT2-222ENST00000555774 ERBB3P21860 1342 aa16.21■□□□□ 0.18
SHMT2-222ENST00000555774 CCDC171Q6TFL3 1326 aa16.21■□□□□ 0.18
SHMT2-222ENST00000555774 STX6O43752 255 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 LETM1O95202 739 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-222ENST00000555774 CASTP20810 708 aaKnown RBP16.2■□□□□ 0.18
SHMT2-222ENST00000555774 CSPP1Q1MSJ5 1256 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 ADAMTSL3P82987 1691 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 PDIA6Q15084 440 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 KRT28Q7Z3Y7 464 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 FAM184AQ8NB25 1140 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 PDRG1Q9NUG6 133 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 PA2G4Q9UQ80 394 aaKnown RBP16.2■□□□□ 0.18
SHMT2-222ENST00000555774 CYP46A1Q9Y6A2 500 aa16.2■□□□□ 0.18
SHMT2-222ENST00000555774 ZKSCAN1P17029 563 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-222ENST00000555774 NECTIN1Q15223 517 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 TPM2P07951 284 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 NEXNQ0ZGT2 675 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 KAZALD1Q96I82 304 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 BICC1Q9H694 974 aaKnown RBP16.19■□□□□ 0.18
SHMT2-222ENST00000555774 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.19■□□□□ 0.18
SHMT2-222ENST00000555774 CCDC39Q9UFE4 941 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 AXIN2Q9Y2T1 843 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 C1orf167Q5SNV9 1468 aa16.19■□□□□ 0.18
SHMT2-222ENST00000555774 ZNF500O60304 480 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-222ENST00000555774 SASH1O94885 1247 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 F13A1P00488 732 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 SYT1P21579 422 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 PTH1RQ03431 593 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 ZNF790Q6PG37 636 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-222ENST00000555774 JAKMIP1Q96N16 626 aaKnown RBP16.18■□□□□ 0.18
SHMT2-222ENST00000555774 SLC52A2Q9HAB3 445 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 ALS2Q96Q42 1657 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 SETD1BQ9UPS6 1966 aaKnown RBP16.18■□□□□ 0.18
SHMT2-222ENST00000555774 PRAMEF22A3QJZ6 481 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 OFD1O75665 1012 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 PSMA5P28066 241 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 UBE2HP62256 183 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 UVSSAQ2YD98 709 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 CCDC183Q5T5S1 534 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 PRPF40BQ6NWY9 871 aaKnown RBP16.18■□□□□ 0.18
SHMT2-222ENST00000555774 RAPGEF4Q8WZA2 1011 aa16.18■□□□□ 0.18
SHMT2-222ENST00000555774 RIC3Q7Z5B4 369 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 MAP4K1Q92918 833 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 COL15A1P39059 1388 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 NPHP3Q7Z494 1330 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 KDM6AO15550 1401 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-222ENST00000555774 GADD45BO75293 160 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-222ENST00000555774 TERF1P54274 439 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 XPCQ01831 940 aaPredicted RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms