RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 WWC1Q8IX03 1113 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 NECTIN2Q92692 538 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 CHD4Q14839 1912 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 RGL2O15211 777 aa17.85■□□□□ 0.45
SHMT2-219ENST00000555563 ANXA1P04083 346 aa17.85■□□□□ 0.45
SHMT2-219ENST00000555563 HLFQ16534 295 aa17.85■□□□□ 0.45
SHMT2-219ENST00000555563 CLEC4GQ6UXB4 293 aa17.85■□□□□ 0.45
SHMT2-219ENST00000555563 TTLL7Q6ZT98 887 aa17.85■□□□□ 0.45
SHMT2-219ENST00000555563 MAP3K15Q6ZN16 1313 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 HOXB7P09629 217 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 DUSP27Q5VZP5 1158 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 KIF6Q6ZMV9 814 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 SETDB2Q96T68 719 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 NUP98P52948 1817 aa17.84■□□□□ 0.45
SHMT2-219ENST00000555563 COL11A2P13942 1736 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-219ENST00000555563 ATP10DQ9P241 1426 aa17.83■□□□□ 0.45
SHMT2-219ENST00000555563 GOLGB1Q14789 3259 aaKnown RBP17.83■□□□□ 0.44
SHMT2-219ENST00000555563 GRIN3BO60391 1043 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 KCNA3P22001 575 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 CHRNA5P30532 468 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 HDGFL1Q5TGJ6 251 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 PRR5LQ6MZQ0 368 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 ZBTB3Q9H5J0 574 aa17.83■□□□□ 0.44
SHMT2-219ENST00000555563 ERVV-1B6SEH8 477 aa17.82■□□□□ 0.44
SHMT2-219ENST00000555563 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
SHMT2-219ENST00000555563 CCDC24Q8N4L8 307 aa17.82■□□□□ 0.44
SHMT2-219ENST00000555563 CNBD1Q8NA66 436 aa17.82■□□□□ 0.44
SHMT2-219ENST00000555563 CHPF2Q9P2E5 772 aa17.82■□□□□ 0.44
SHMT2-219ENST00000555563 NIP7Q9Y221 180 aaKnown RBP eCLIP17.82■□□□□ 0.44
SHMT2-219ENST00000555563 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-219ENST00000555563 ARFGEF1Q9Y6D6 1849 aa17.82■□□□□ 0.44
SHMT2-219ENST00000555563 TSR2Q969E8 191 aaKnown RBP17.81■□□□□ 0.44
SHMT2-219ENST00000555563 DDX21Q9NR30 783 aaKnown RBP eCLIP17.81■□□□□ 0.44
SHMT2-219ENST00000555563 BCS1LQ9Y276 419 aa17.81■□□□□ 0.44
SHMT2-219ENST00000555563 IL16Q14005 1332 aa17.8■□□□□ 0.44
SHMT2-219ENST00000555563 NPHP1O15259 732 aa17.8■□□□□ 0.44
SHMT2-219ENST00000555563 NBPF5PQ86XG9 351 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-219ENST00000555563 ANKRD36CQ5JPF3 1778 aa17.79■□□□□ 0.44
SHMT2-219ENST00000555563 C8orf58Q8NAV2 365 aa17.79■□□□□ 0.44
SHMT2-219ENST00000555563 XAGE3Q8WTP9 111 aa17.79■□□□□ 0.44
SHMT2-219ENST00000555563 PIM2Q9P1W9 311 aa17.79■□□□□ 0.44
SHMT2-219ENST00000555563 UBN2Q6ZU65 1347 aa17.78■□□□□ 0.44
SHMT2-219ENST00000555563 TNRC6CQ9HCJ0 1690 aaKnown RBP17.78■□□□□ 0.44
SHMT2-219ENST00000555563 ELL2O00472 640 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-219ENST00000555563 ST5P78524 1137 aa17.78■□□□□ 0.44
SHMT2-219ENST00000555563 AIMP1Q12904 312 aaKnown RBP17.78■□□□□ 0.44
SHMT2-219ENST00000555563 COPS6Q7L5N1 327 aa17.78■□□□□ 0.44
SHMT2-219ENST00000555563 C2CD5Q86YS7 1000 aa17.78■□□□□ 0.44
SHMT2-219ENST00000555563 BRIP1Q9BX63 1249 aa17.78■□□□□ 0.44
SHMT2-219ENST00000555563 FAM177BA6PVY3 158 aa17.77■□□□□ 0.44
SHMT2-219ENST00000555563 GPTP24298 496 aa17.77■□□□□ 0.44
SHMT2-219ENST00000555563 DALRD3Q5D0E6 543 aaKnown RBP17.77■□□□□ 0.44
SHMT2-219ENST00000555563 GIGYF2Q6Y7W6 1299 aaKnown RBP17.77■□□□□ 0.44
SHMT2-219ENST00000555563 DBF4Q9UBU7 674 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-219ENST00000555563 FANCIQ9NVI1 1328 aa17.76■□□□□ 0.43
SHMT2-219ENST00000555563 CCER2I3L3R5 266 aa17.76■□□□□ 0.43
SHMT2-219ENST00000555563 WDR63Q8IWG1 891 aa17.76■□□□□ 0.43
SHMT2-219ENST00000555563 TSPYL6Q8N831 410 aa17.76■□□□□ 0.43
SHMT2-219ENST00000555563 ABCC12Q96J65 1359 aa17.76■□□□□ 0.43
SHMT2-219ENST00000555563 IBTKQ9P2D0 1353 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-219ENST00000555563 H0YIN7 160 aa17.75■□□□□ 0.43
SHMT2-219ENST00000555563 PDE6BP35913 854 aa17.75■□□□□ 0.43
SHMT2-219ENST00000555563 ZNF34Q8IZ26 560 aa17.75■□□□□ 0.43
SHMT2-219ENST00000555563 ARFGEF2Q9Y6D5 1785 aa17.75■□□□□ 0.43
SHMT2-219ENST00000555563 TPTE2Q6XPS3 522 aa17.74■□□□□ 0.43
SHMT2-219ENST00000555563 HYPKQ9NX55 129 aa17.74■□□□□ 0.43
SHMT2-219ENST00000555563 SUSD4Q5VX71 490 aa17.73■□□□□ 0.43
SHMT2-219ENST00000555563 NUTM1Q86Y26 1132 aa17.73■□□□□ 0.43
SHMT2-219ENST00000555563 PDZRN3Q9UPQ7 1066 aa17.73■□□□□ 0.43
SHMT2-219ENST00000555563 CACNA1SQ13698 1873 aa17.73■□□□□ 0.43
SHMT2-219ENST00000555563 DIEXFQ68CQ4 756 aaKnown RBP17.72■□□□□ 0.43
SHMT2-219ENST00000555563 TTLL6Q8N841 843 aa17.72■□□□□ 0.43
SHMT2-219ENST00000555563 NYXQ9GZU5 481 aa17.72■□□□□ 0.43
SHMT2-219ENST00000555563 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-219ENST00000555563 ZNF521Q96K83 1311 aa17.72■□□□□ 0.43
SHMT2-219ENST00000555563 ADCY9O60503 1353 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 NTSR2O95665 410 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 SRGNP10124 158 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 GTF2E1P29083 439 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-219ENST00000555563 TWISTNBQ3B726 338 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-219ENST00000555563 ERFEQ4G0M1 354 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 PARP10Q53GL7 1025 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 CCDC30Q5VVM6 783 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 ARHGAP27Q6ZUM4 889 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 PLBD2Q8NHP8 589 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 ZNF622Q969S3 477 aaKnown RBP eCLIP17.71■□□□□ 0.43
SHMT2-219ENST00000555563 RIC1Q4ADV7 1423 aa17.71■□□□□ 0.43
SHMT2-219ENST00000555563 HSP90AB3PQ58FF7 597 aa17.7■□□□□ 0.42
SHMT2-219ENST00000555563 STYK1Q6J9G0 422 aa17.7■□□□□ 0.42
SHMT2-219ENST00000555563 PHAXQ9H814 394 aaKnown RBP17.7■□□□□ 0.42
SHMT2-219ENST00000555563 KLRG2A4D1S0 409 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-219ENST00000555563 TCIRG1Q13488 830 aa17.69■□□□□ 0.42
SHMT2-219ENST00000555563 ANKRD13DQ6ZTN6 518 aa17.69■□□□□ 0.42
SHMT2-219ENST00000555563 PPP1R42Q7Z4L9 355 aa17.69■□□□□ 0.42
SHMT2-219ENST00000555563 SLX4Q8IY92 1834 aa17.68■□□□□ 0.42
SHMT2-219ENST00000555563 TCERG1O14776 1098 aaKnown RBP17.68■□□□□ 0.42
SHMT2-219ENST00000555563 GOLGA2Q08379 1002 aa17.68■□□□□ 0.42
SHMT2-219ENST00000555563 NLRP10Q86W26 655 aa17.68■□□□□ 0.42
SHMT2-219ENST00000555563 MASTLQ96GX5 879 aa17.68■□□□□ 0.42
SHMT2-219ENST00000555563 CHMP4AQ9BY43 222 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms