RNA–Protein interactions for RNA: ENST00000554615.1

SEC23A-207, Transcript of Sec23 homolog A, coat complex II component, humanhuman

TSL 1 (best)

Gene SEC23A, Length 3,813 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC23A-207ENST00000554615 BECN1Q14457 450 aa4.3□□□□□ -1.72
SEC23A-207ENST00000554615 USP44Q9H0E7 712 aa4.3□□□□□ -1.72
SEC23A-207ENST00000554615 U3KPZ7 1027 aaPredicted RBP4.3□□□□□ -1.72
SEC23A-207ENST00000554615 FER1L6Q2WGJ9 1857 aa4.3□□□□□ -1.72
SEC23A-207ENST00000554615 MINK1Q8N4C8 1332 aaPredicted RBP4.3□□□□□ -1.72
SEC23A-207ENST00000554615 L1TD1Q5T7N2 865 aaKnown RBP4.3□□□□□ -1.72
SEC23A-207ENST00000554615 ZRANB1Q9UGI0 708 aa4.3□□□□□ -1.72
SEC23A-207ENST00000554615 BRWD3Q6RI45 1802 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 FRAT2O75474 233 aaPredicted RBP4.29□□□□□ -1.72
SEC23A-207ENST00000554615 MRE11P49959 708 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 PDE1AP54750 535 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 TNPO1Q92973 898 aaKnown RBP4.29□□□□□ -1.72
SEC23A-207ENST00000554615 FBXO3Q9UK99 471 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 MYH8P13535 1937 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 THEMISQ8N1K5 641 aaPredicted RBP4.29□□□□□ -1.72
SEC23A-207ENST00000554615 ESYT1Q9BSJ8 1104 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 IRS2Q9Y4H2 1338 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 ZSWIM8A7E2V4 1837 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 CHMLP26374 656 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 NECTIN1Q15223 517 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 SYCP1Q15431 976 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 UVSSAQ2YD98 709 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 CHMP4AQ9BY43 222 aa4.29□□□□□ -1.72
SEC23A-207ENST00000554615 U2AF1L5P0DN76 240 aaPredicted RBP4.28□□□□□ -1.72
SEC23A-207ENST00000554615 SDSP20132 328 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 U2AF1Q01081 240 aaKnown RBP eCLIP4.28□□□□□ -1.72
SEC23A-207ENST00000554615 KCNH5Q8NCM2 988 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 ZSWIM6Q9HCJ5 1215 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 SMC4Q9NTJ3 1288 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 SGSM2O43147 1006 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 AMOTL2Q9Y2J4 779 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 AMOTQ4VCS5 1084 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 GAS2L3Q86XJ1 694 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 AEBP1Q8IUX7 1158 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 SMARCC2Q8TAQ2 1214 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 RRAGDQ9NQL2 400 aaPredicted RBP4.28□□□□□ -1.72
SEC23A-207ENST00000554615 WDR81Q562E7 1941 aa4.28□□□□□ -1.72
SEC23A-207ENST00000554615 GNAT3A8MTJ3 354 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 GTF2E1P29083 439 aaPredicted RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 CDC25BP30305 580 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 KCNJ6P48051 423 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 TRIM28Q13263 835 aaKnown RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 GPT2Q8TD30 523 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 USP25Q9UHP3 1055 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 PDS5AQ29RF7 1337 aaKnown RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 BAG4O95429 457 aaKnown RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 NOL7Q9UMY1 257 aaKnown RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 ARID2Q68CP9 1835 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 MCCD1P59942 119 aaPredicted RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 TAF7Q15545 349 aaPredicted RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 IL25Q9H293 177 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 COPRSQ9NQ92 184 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 CDHR2Q9BYE9 1310 aa4.27□□□□□ -1.73
SEC23A-207ENST00000554615 COL4A4P53420 1690 aaPredicted RBP4.27□□□□□ -1.73
SEC23A-207ENST00000554615 PHIPQ8WWQ0 1821 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 CIAO1O76071 339 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 RNMTO43148 476 aaKnown RBP4.26□□□□□ -1.73
SEC23A-207ENST00000554615 GNAI3P08754 354 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 ADD1P35611 737 aaKnown RBP4.26□□□□□ -1.73
SEC23A-207ENST00000554615 NUCB2P80303 420 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 MAP4K1Q92918 833 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 BPIFA3Q9BQP9 254 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 POGKQ9P215 609 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 SPATA31A3Q5VYP0 1347 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 FOXP2O15409 715 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 NEFMP07197 916 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 CCDC173Q0VFZ6 552 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 HSP90AB2PQ58FF8 381 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 VPS53Q5VIR6 699 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 LHX8Q68G74 356 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 MTA3Q9BTC8 594 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 NCKAP5LQ9HCH0 1330 aa4.26□□□□□ -1.73
SEC23A-207ENST00000554615 WDR90Q96KV7 1748 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 ERC2O15083 957 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 SRPK2P78362 688 aaKnown RBP4.25□□□□□ -1.73
SEC23A-207ENST00000554615 ARID5BQ14865 1188 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 G2E3Q7L622 706 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 MEIS3Q99687 375 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 SNED1Q8TER0 1413 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 FECHP22830 423 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 FLIIQ13045 1269 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 CCDC30Q5VVM6 783 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 SARM1Q6SZW1 724 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 LRSAM1Q6UWE0 723 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 VSIG10Q8N0Z9 540 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 HYPKQ9NX55 129 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 CTIFO43310 598 aaKnown RBP4.25□□□□□ -1.73
SEC23A-207ENST00000554615 TRAK2O60296 914 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 OFD1O75665 1012 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 NT5C2P49902 561 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 TXNDC2Q86VQ3 553 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 GRPEL1Q9HAV7 217 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 RRP7AQ9Y3A4 280 aaKnown RBP4.25□□□□□ -1.73
SEC23A-207ENST00000554615 ZNF236Q9UL36 1845 aa4.25□□□□□ -1.73
SEC23A-207ENST00000554615 WDR17Q8IZU2 1322 aa4.24□□□□□ -1.73
SEC23A-207ENST00000554615 PNMA6EA0A0J9YXQ4 647 aa4.24□□□□□ -1.73
SEC23A-207ENST00000554615 H7C1W4 665 aa4.24□□□□□ -1.73
SEC23A-207ENST00000554615 GNAI2P04899 355 aa4.24□□□□□ -1.73
SEC23A-207ENST00000554615 EXOSC10Q01780 885 aaKnown RBP4.24□□□□□ -1.73
SEC23A-207ENST00000554615 ATL3Q6DD88 541 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms