RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 NUTM2AQ8IVF1 878 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-212ENST00000554467 RHPN1Q8TCX5 695 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NBPF26B4DH59 902 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 CD2BP2O95400 341 aaKnown RBP14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NBPF14Q5TI25 921 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NBPF10Q6P3W6 841 aaKnown RBP14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NBPF15Q8N660 670 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 KIF2CQ99661 725 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 LRP10Q7Z4F1 713 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 NHSL1Q5SYE7 1610 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 ALDH1L1O75891 902 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 RBM25P49756 843 aaKnown RBP14.33□□□□□ -0.12
SHMT2-212ENST00000554467 TTLL7Q6ZT98 887 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 SYTL4Q96C24 671 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-212ENST00000554467 GZF1Q9H116 711 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-212ENST00000554467 FOXD4L1Q9NU39 408 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-212ENST00000554467 ABCC6O95255 1503 aa14.33□□□□□ -0.12
SHMT2-212ENST00000554467 NEURL1BA8MQ27 555 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 NEXNQ0ZGT2 675 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 EPHA10Q5JZY3 1008 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 N4BP2Q86UW6 1770 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-212ENST00000554467 SALL3Q9BXA9 1300 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 ROBO1Q9Y6N7 1651 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 ASAP1Q9ULH1 1129 aa14.32□□□□□ -0.12
SHMT2-212ENST00000554467 ZBTB3Q9H5J0 574 aa14.31□□□□□ -0.12
SHMT2-212ENST00000554467 MRC1P22897 1456 aa14.31□□□□□ -0.12
SHMT2-212ENST00000554467 UBE3BQ7Z3V4 1068 aa14.31□□□□□ -0.12
SHMT2-212ENST00000554467 METTL22Q9BUU2 404 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-212ENST00000554467 GCKRQ14397 625 aa14.31□□□□□ -0.12
SHMT2-212ENST00000554467 TMOD3Q9NYL9 352 aa14.31□□□□□ -0.12
SHMT2-212ENST00000554467 ERVV-2B6SEH9 535 aa14.3□□□□□ -0.12
SHMT2-212ENST00000554467 PARP4Q9UKK3 1724 aaKnown RBP14.3□□□□□ -0.12
SHMT2-212ENST00000554467 L1TD1Q5T7N2 865 aaKnown RBP14.3□□□□□ -0.12
SHMT2-212ENST00000554467 HSCBQ8IWL3 235 aa14.3□□□□□ -0.12
SHMT2-212ENST00000554467 OSBPL3Q9H4L5 887 aa14.3□□□□□ -0.12
SHMT2-212ENST00000554467 FSD2A1L4K1 749 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 PIGBQ92521 554 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 KIF1BPQ96EK5 621 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 ANTXR1Q9H6X2 564 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 CASC1Q6TDU7 716 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 USP26Q9BXU7 913 aa14.29□□□□□ -0.12
SHMT2-212ENST00000554467 NKX1-1Q15270 411 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-212ENST00000554467 RAB11FIP3O75154 756 aa14.28□□□□□ -0.12
SHMT2-212ENST00000554467 A0A087WZG4 1122 aa14.28□□□□□ -0.12
SHMT2-212ENST00000554467 IL25Q9H293 177 aa14.28□□□□□ -0.12
SHMT2-212ENST00000554467 ERBB4Q15303 1308 aa14.27□□□□□ -0.12
SHMT2-212ENST00000554467 DNAJC10Q8IXB1 793 aa14.27□□□□□ -0.13
SHMT2-212ENST00000554467 CHMP3Q9Y3E7 222 aa14.27□□□□□ -0.13
SHMT2-212ENST00000554467 SHANK3Q9BYB0 1731 aa14.27□□□□□ -0.13
SHMT2-212ENST00000554467 CCDC8Q9H0W5 538 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-212ENST00000554467 CCDC9Q9Y3X0 531 aaKnown RBP14.27□□□□□ -0.13
SHMT2-212ENST00000554467 GLI3P10071 1580 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 MTX1Q13505 466 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 AACSQ86V21 672 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 PI4K2BQ8TCG2 481 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 STAP2Q9UGK3 403 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 ERC2O15083 957 aa14.26□□□□□ -0.13
SHMT2-212ENST00000554467 TLR7Q9NYK1 1049 aaKnown RBP14.26□□□□□ -0.13
SHMT2-212ENST00000554467 SASH1O94885 1247 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 CHMLP26374 656 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 PLBD2Q8NHP8 589 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 ANO2Q9NQ90 1003 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 KCPQ6ZWJ8 1503 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 G3BP1Q13283 466 aaKnown RBP eCLIP14.25□□□□□ -0.132e-7■■■□□ 18
SHMT2-212ENST00000554467 CLASRPQ8N2M8 674 aaKnown RBP14.25□□□□□ -0.13
SHMT2-212ENST00000554467 ATG3Q9NT62 314 aa14.25□□□□□ -0.13
SHMT2-212ENST00000554467 ACSBG1Q96GR2 724 aa14.24□□□□□ -0.13
SHMT2-212ENST00000554467 ESYT1Q9BSJ8 1104 aa14.24□□□□□ -0.13
SHMT2-212ENST00000554467 UTYO14607 1347 aa14.24□□□□□ -0.13
SHMT2-212ENST00000554467 TOGARAM1Q9Y4F4 1720 aa14.24□□□□□ -0.13
SHMT2-212ENST00000554467 EXOC5O00471 708 aa14.24□□□□□ -0.13
SHMT2-212ENST00000554467 IFIT2P09913 472 aaKnown RBP14.24□□□□□ -0.13
SHMT2-212ENST00000554467 EAF2Q96CJ1 260 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-212ENST00000554467 PRIM1P49642 420 aaKnown RBP14.23□□□□□ -0.13
SHMT2-212ENST00000554467 HSP90AB4PQ58FF6 505 aa14.23□□□□□ -0.13
SHMT2-212ENST00000554467 CCDC85AQ96PX6 553 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-212ENST00000554467 GOLGA6L3A6NEY3 463 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 REC8O95072 547 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 LMBR1LQ6UX01 489 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 SLC4A9Q96Q91 983 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 PALD1Q9ULE6 856 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 PRDM4Q9UKN5 801 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 LTBP4Q8N2S1 1624 aa14.22□□□□□ -0.13
SHMT2-212ENST00000554467 AFDNP55196 1824 aaKnown RBP14.21□□□□□ -0.13
SHMT2-212ENST00000554467 CWC27Q6UX04 472 aaKnown RBP14.21□□□□□ -0.13
SHMT2-212ENST00000554467 NOL8Q76FK4 1167 aaKnown RBP14.21□□□□□ -0.13
SHMT2-212ENST00000554467 NDUFB9Q9Y6M9 179 aa14.21□□□□□ -0.13
SHMT2-212ENST00000554467 COL16A1Q07092 1604 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-212ENST00000554467 PLEKHG2Q9H7P9 1386 aa14.21□□□□□ -0.13
SHMT2-212ENST00000554467 ARFGEF2Q9Y6D5 1785 aa14.21□□□□□ -0.13
SHMT2-212ENST00000554467 HDAC5Q9UQL6 1122 aa14.21□□□□□ -0.14
SHMT2-212ENST00000554467 GPTP24298 496 aa14.2□□□□□ -0.14
SHMT2-212ENST00000554467 SNX21Q969T3 373 aa14.2□□□□□ -0.14
SHMT2-212ENST00000554467 SYNE4Q8N205 404 aa14.2□□□□□ -0.14
SHMT2-212ENST00000554467 ZNF594Q96JF6 807 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-212ENST00000554467 BOLA2Q9H3K6 86 aa14.2□□□□□ -0.14
SHMT2-212ENST00000554467 CWC25Q9NXE8 425 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-212ENST00000554467 K7ELQ4 463 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-212ENST00000554467 CASP7P55210 303 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms