RNA–Protein interactions for RNA: ENST00000553370.5

ACTN1-208, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 605 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-208ENST00000553370 TTLL6Q8N841 843 aa13.25□□□□□ -0.29
ACTN1-208ENST00000553370 RBM46Q8TBY0 533 aaKnown RBP13.25□□□□□ -0.29
ACTN1-208ENST00000553370 FMNL2Q96PY5 1086 aa13.25□□□□□ -0.29
ACTN1-208ENST00000553370 FER1L6Q2WGJ9 1857 aa13.25□□□□□ -0.29
ACTN1-208ENST00000553370 ARFGEF2Q9Y6D5 1785 aa13.25□□□□□ -0.29
ACTN1-208ENST00000553370 CARMIL3Q8ND23 1372 aa13.24□□□□□ -0.29
ACTN1-208ENST00000553370 PRKCSHP14314 528 aaPredicted RBP13.24□□□□□ -0.29
ACTN1-208ENST00000553370 PRKAR2BP31323 418 aa13.24□□□□□ -0.29
ACTN1-208ENST00000553370 ZNF790Q6PG37 636 aa13.24□□□□□ -0.29
ACTN1-208ENST00000553370 RTF1Q92541 710 aaKnown RBP13.24□□□□□ -0.29
ACTN1-208ENST00000553370 ZNF622Q969S3 477 aaKnown RBP eCLIP13.24□□□□□ -0.29
ACTN1-208ENST00000553370 ZNF496Q96IT1 587 aaPredicted RBP13.24□□□□□ -0.29
ACTN1-208ENST00000553370 LAMB4A4D0S4 1761 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 BTBD11A6QL63 1104 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 PER1O15534 1290 aaPredicted RBP13.23□□□□□ -0.29
ACTN1-208ENST00000553370 NEFMP07197 916 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 LMNB1P20700 586 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 IFFO2Q5TF58 517 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 RRAGCQ9HB90 399 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 TBC1D2BQ9UPU7 963 aa13.23□□□□□ -0.29
ACTN1-208ENST00000553370 ZC3H4Q9UPT8 1303 aaKnown RBP13.22□□□□□ -0.29
ACTN1-208ENST00000553370 U2AF1L5P0DN76 240 aaPredicted RBP13.22□□□□□ -0.29
ACTN1-208ENST00000553370 PDE6BP35913 854 aa13.22□□□□□ -0.29
ACTN1-208ENST00000553370 ST5P78524 1137 aa13.22□□□□□ -0.29
ACTN1-208ENST00000553370 U2AF1Q01081 240 aaKnown RBP eCLIP13.22□□□□□ -0.29
ACTN1-208ENST00000553370 FSTL1Q12841 308 aa13.22□□□□□ -0.29
ACTN1-208ENST00000553370 CNBD1Q8NA66 436 aa13.22□□□□□ -0.29
ACTN1-208ENST00000553370 SLX4Q8IY92 1834 aa13.22□□□□□ -0.29
ACTN1-208ENST00000553370 IL6STP40189 918 aaPredicted RBP13.21□□□□□ -0.29
ACTN1-208ENST00000553370 EIF5P55010 431 aaKnown RBP13.21□□□□□ -0.29
ACTN1-208ENST00000553370 TBC1D9BQ66K14 1250 aa13.21□□□□□ -0.29
ACTN1-208ENST00000553370 SMC1BQ8NDV3 1235 aa13.21□□□□□ -0.29
ACTN1-208ENST00000553370 SETDB2Q96T68 719 aa13.21□□□□□ -0.29
ACTN1-208ENST00000553370 BCL2L12Q9HB09 334 aa13.21□□□□□ -0.29
ACTN1-208ENST00000553370 PDZRN3Q9UPQ7 1066 aa13.21□□□□□ -0.29
ACTN1-208ENST00000553370 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
ACTN1-208ENST00000553370 ZNF652Q9Y2D9 606 aa13.2□□□□□ -0.3
ACTN1-208ENST00000553370 NUP98P52948 1817 aa13.19□□□□□ -0.3
ACTN1-208ENST00000553370 DZIP3Q86Y13 1208 aaKnown RBP13.19□□□□□ -0.3
ACTN1-208ENST00000553370 CCDC24Q8N4L8 307 aa13.19□□□□□ -0.3
ACTN1-208ENST00000553370 BRIP1Q9BX63 1249 aa13.19□□□□□ -0.3
ACTN1-208ENST00000553370 C21orf2O43822 256 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 A1BGP04217 495 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 PRR5LQ6MZQ0 368 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 DPY19L2Q6NUT2 758 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 NBPF5PQ86XG9 351 aaPredicted RBP13.18□□□□□ -0.3
ACTN1-208ENST00000553370 RSPH6AQ9H0K4 717 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 CEMIPQ8WUJ3 1361 aa13.18□□□□□ -0.3
ACTN1-208ENST00000553370 VEGFAP15692 232 aaPredicted RBP13.17□□□□□ -0.3
ACTN1-208ENST00000553370 PIP4K2AP48426 406 aaPredicted RBP13.17□□□□□ -0.3
ACTN1-208ENST00000553370 MCM10Q7L590 875 aa13.17□□□□□ -0.3
ACTN1-208ENST00000553370 CNKSR1Q969H4 720 aa13.17□□□□□ -0.3
ACTN1-208ENST00000553370 PHACTR3Q96KR7 559 aa13.17□□□□□ -0.3
ACTN1-208ENST00000553370 GLTPD2A6NH11 291 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 SNRPA1P09661 255 aaKnown RBP13.16□□□□□ -0.3
ACTN1-208ENST00000553370 HTRA3P83110 453 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 ERFEQ4G0M1 354 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 SOGA3Q5TF21 947 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 TAOK3Q9H2K8 898 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 TSHZ2Q9NRE2 1034 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 KDM3BQ7LBC6 1761 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 PCNTO95613 3336 aa13.16□□□□□ -0.3
ACTN1-208ENST00000553370 NFKBIEO00221 500 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 KCNQ3O43525 872 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 CAMTA2O94983 1202 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 GTF2E1P29083 439 aaPredicted RBP13.15□□□□□ -0.3
ACTN1-208ENST00000553370 PPP2R1AP30153 589 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 KLRG1Q96E93 195 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 SCN4AP35499 1836 aa13.15□□□□□ -0.3
ACTN1-208ENST00000553370 FAM177BA6PVY3 158 aa13.14□□□□□ -0.31
ACTN1-208ENST00000553370 PRPF40BQ6NWY9 871 aaKnown RBP13.14□□□□□ -0.31
ACTN1-208ENST00000553370 MASTLQ96GX5 879 aa13.14□□□□□ -0.31
ACTN1-208ENST00000553370 DCTN1Q14203 1278 aa13.13□□□□□ -0.31
ACTN1-208ENST00000553370 STYK1Q6J9G0 422 aa13.13□□□□□ -0.31
ACTN1-208ENST00000553370 NIP7Q9Y221 180 aaKnown RBP eCLIP13.13□□□□□ -0.31
ACTN1-208ENST00000553370 MAPK8IP3Q9UPT6 1336 aa13.13□□□□□ -0.31
ACTN1-208ENST00000553370 DNAJC5GQ8N7S2 189 aa13.12□□□□□ -0.31
ACTN1-208ENST00000553370 USP16Q9Y5T5 823 aa13.12□□□□□ -0.31
ACTN1-208ENST00000553370 PRAMEF22A3QJZ6 481 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 CCDC93Q567U6 631 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 TPTE2Q6XPS3 522 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 KIF6Q6ZMV9 814 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 NGEFQ8N5V2 710 aa13.11□□□□□ -0.31
ACTN1-208ENST00000553370 HTATSF1O43719 755 aaKnown RBP13.1□□□□□ -0.31
ACTN1-208ENST00000553370 SRGNP10124 158 aa13.1□□□□□ -0.31
ACTN1-208ENST00000553370 NPR1P16066 1061 aa13.1□□□□□ -0.31
ACTN1-208ENST00000553370 PRELPP51888 382 aa13.1□□□□□ -0.31
ACTN1-208ENST00000553370 TAF7Q15545 349 aaPredicted RBP13.1□□□□□ -0.31
ACTN1-208ENST00000553370 PNISRQ8TF01 805 aaKnown RBP13.1□□□□□ -0.31
ACTN1-208ENST00000553370 LTBP3Q9NS15 1303 aa13.1□□□□□ -0.31
ACTN1-208ENST00000553370 GSE1Q14687 1217 aa13.09□□□□□ -0.31
ACTN1-208ENST00000553370 TPRNQ4KMQ1 711 aa13.09□□□□□ -0.31
ACTN1-208ENST00000553370 PNNQ9H307 717 aaKnown RBP13.09□□□□□ -0.31
ACTN1-208ENST00000553370 ANKRD36CQ5JPF3 1778 aa13.08□□□□□ -0.32
ACTN1-208ENST00000553370 IQCA1LA6NCM1 817 aa13.08□□□□□ -0.32
ACTN1-208ENST00000553370 NYXQ9GZU5 481 aa13.08□□□□□ -0.32
ACTN1-208ENST00000553370 MIS18AQ9NYP9 233 aa13.08□□□□□ -0.32
ACTN1-208ENST00000553370 CHADLQ6NUI6 762 aa13.07□□□□□ -0.32
ACTN1-208ENST00000553370 HS6ST3Q8IZP7 471 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms