RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 TSPYL4Q9UJ04 414 aa29.91■■■□□ 2.38
CHD4-214ENST00000545942 NIP7Q9Y221 180 aaKnown RBP eCLIP29.91■■■□□ 2.38
CHD4-214ENST00000545942 NMRK2Q9NPI5 230 aa29.9■■■□□ 2.38
CHD4-214ENST00000545942 LMNB1P20700 586 aa29.89■■■□□ 2.38
CHD4-214ENST00000545942 WDR43Q15061 677 aaKnown RBP eCLIP29.88■■■□□ 2.375e-6■□□□□ 10.7
CHD4-214ENST00000545942 HLFQ16534 295 aa29.88■■■□□ 2.37
CHD4-214ENST00000545942 TPTE2Q6XPS3 522 aa29.88■■■□□ 2.37
CHD4-214ENST00000545942 RRP7AQ9Y3A4 280 aaKnown RBP29.88■■■□□ 2.37
CHD4-214ENST00000545942 KDM2BQ8NHM5 1336 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 ZC3H4Q9UPT8 1303 aaKnown RBP29.87■■■□□ 2.37
CHD4-214ENST00000545942 SRGNP10124 158 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 STYK1Q6J9G0 422 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 CCDC146Q8IYE0 955 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 NGEFQ8N5V2 710 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 CNKSR1Q969H4 720 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 BABAM1Q9NWV8 329 aa29.87■■■□□ 2.37
CHD4-214ENST00000545942 COL11A2P13942 1736 aaPredicted RBP29.86■■■□□ 2.37
CHD4-214ENST00000545942 TOMM70O94826 608 aa29.86■■■□□ 2.37
CHD4-214ENST00000545942 MASTLQ96GX5 879 aa29.86■■■□□ 2.37
CHD4-214ENST00000545942 ERVV-1B6SEH8 477 aa29.85■■■□□ 2.37
CHD4-214ENST00000545942 NFKBIEO00221 500 aa29.85■■■□□ 2.37
CHD4-214ENST00000545942 C21orf2O43822 256 aa29.85■■■□□ 2.37
CHD4-214ENST00000545942 HSPA6P17066 643 aa29.85■■■□□ 2.37
CHD4-214ENST00000545942 PRKRIP1Q9H875 184 aaPredicted RBP29.85■■■□□ 2.37
CHD4-214ENST00000545942 SBF1O95248 1867 aa29.84■■■□□ 2.37
CHD4-214ENST00000545942 ERBB4Q15303 1308 aa29.84■■■□□ 2.37
CHD4-214ENST00000545942 MYL6BP14649 208 aa29.84■■■□□ 2.37
CHD4-214ENST00000545942 RUNDC1Q96C34 613 aa29.84■■■□□ 2.37
CHD4-214ENST00000545942 ZNF219Q9P2Y4 722 aaPredicted RBP29.84■■■□□ 2.37
CHD4-214ENST00000545942 MAP3K15Q6ZN16 1313 aa29.83■■■□□ 2.37
CHD4-214ENST00000545942 PRELPP51888 382 aa29.83■■■□□ 2.37
CHD4-214ENST00000545942 KIF6Q6ZMV9 814 aa29.83■■■□□ 2.37
CHD4-214ENST00000545942 NEUROD2Q15784 382 aa29.82■■■□□ 2.36
CHD4-214ENST00000545942 FAM177BA6PVY3 158 aa29.81■■■□□ 2.36
CHD4-214ENST00000545942 PRPF40BQ6NWY9 871 aaKnown RBP29.81■■■□□ 2.36
CHD4-214ENST00000545942 TTLL7Q6ZT98 887 aa29.81■■■□□ 2.36
CHD4-214ENST00000545942 KLRG2A4D1S0 409 aaPredicted RBP29.8■■■□□ 2.36
CHD4-214ENST00000545942 ADAMTS8Q9UP79 889 aa29.8■■■□□ 2.36
CHD4-214ENST00000545942 GTF2E1P29083 439 aaPredicted RBP29.79■■■□□ 2.36
CHD4-214ENST00000545942 NPR1P16066 1061 aa29.78■■■□□ 2.36
CHD4-214ENST00000545942 SOGA3Q5TF21 947 aa29.78■■■□□ 2.36
CHD4-214ENST00000545942 C16orf71Q8IYS4 520 aaPredicted RBP29.78■■■□□ 2.36
CHD4-214ENST00000545942 NYXQ9GZU5 481 aa29.78■■■□□ 2.36
CHD4-214ENST00000545942 ZBTB3Q9H5J0 574 aa29.78■■■□□ 2.36
CHD4-214ENST00000545942 EIF2S2P20042 333 aaKnown RBP29.77■■■□□ 2.36
CHD4-214ENST00000545942 RRAGCQ9HB90 399 aa29.77■■■□□ 2.36
CHD4-214ENST00000545942 TRIM35Q9UPQ4 493 aa29.76■■■□□ 2.36
CHD4-214ENST00000545942 LTBP3Q9NS15 1303 aa29.76■■■□□ 2.35
CHD4-214ENST00000545942 GLTPD2A6NH11 291 aa29.75■■■□□ 2.35
CHD4-214ENST00000545942 RBM46Q8TBY0 533 aaKnown RBP29.75■■■□□ 2.35
CHD4-214ENST00000545942 TAOK3Q9H2K8 898 aa29.75■■■□□ 2.35
CHD4-214ENST00000545942 CEP350Q5VT06 3117 aa29.75■■■□□ 2.35
CHD4-214ENST00000545942 CHL1O00533 1208 aa29.74■■■□□ 2.35
CHD4-214ENST00000545942 PDIA6Q15084 440 aa29.74■■■□□ 2.35
CHD4-214ENST00000545942 SLX4Q8IY92 1834 aa29.73■■■□□ 2.35
CHD4-214ENST00000545942 GIGYF2Q6Y7W6 1299 aaKnown RBP29.73■■■□□ 2.35
CHD4-214ENST00000545942 LRP10Q7Z4F1 713 aa29.73■■■□□ 2.35
CHD4-214ENST00000545942 GPTP24298 496 aa29.72■■■□□ 2.35
CHD4-214ENST00000545942 C7orf43Q8WVR3 580 aa29.72■■■□□ 2.35
CHD4-214ENST00000545942 TNRC6CQ9HCJ0 1690 aaKnown RBP29.72■■■□□ 2.35
CHD4-214ENST00000545942 ARFGEF2Q9Y6D5 1785 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 ERFEQ4G0M1 354 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 NUTM1Q86Y26 1132 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 LAS1LQ9Y4W2 734 aaKnown RBP29.71■■■□□ 2.35
CHD4-214ENST00000545942 UBN2Q6ZU65 1347 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 IBTKQ9P2D0 1353 aaPredicted RBP29.71■■■□□ 2.35
CHD4-214ENST00000545942 FER1L6Q2WGJ9 1857 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 CCDC93Q567U6 631 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 ZNF34Q8IZ26 560 aa29.71■■■□□ 2.35
CHD4-214ENST00000545942 ABCC12Q96J65 1359 aa29.7■■■□□ 2.35
CHD4-214ENST00000545942 ALDH1B1P30837 517 aa29.7■■■□□ 2.34
CHD4-214ENST00000545942 PROSER3Q2NL68 480 aa29.7■■■□□ 2.34
CHD4-214ENST00000545942 DPY19L2Q6NUT2 758 aa29.7■■■□□ 2.34
CHD4-214ENST00000545942 TIAM2Q8IVF5 1701 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 NUP98P52948 1817 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 ANXA1P04083 346 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 APLP1P51693 650 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 CRY2Q49AN0 593 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 SUSD4Q5VX71 490 aa29.69■■■□□ 2.34
CHD4-214ENST00000545942 VEGFAP15692 232 aaPredicted RBP29.68■■■□□ 2.34
CHD4-214ENST00000545942 FSTL1Q12841 308 aa29.68■■■□□ 2.34
CHD4-214ENST00000545942 NECTIN2Q92692 538 aa29.68■■■□□ 2.34
CHD4-214ENST00000545942 RIC1Q4ADV7 1423 aa29.67■■■□□ 2.34
CHD4-214ENST00000545942 CACNA1SQ13698 1873 aa29.67■■■□□ 2.34
CHD4-214ENST00000545942 KRT24Q2M2I5 525 aa29.67■■■□□ 2.34
CHD4-214ENST00000545942 PARP10Q53GL7 1025 aa29.67■■■□□ 2.34
CHD4-214ENST00000545942 ZEB1P37275 1124 aaPredicted RBP29.66■■■□□ 2.34
CHD4-214ENST00000545942 PPP1R42Q7Z4L9 355 aa29.66■■■□□ 2.34
CHD4-214ENST00000545942 CCDC88AQ3V6T2 1871 aa29.65■■■□□ 2.34
CHD4-214ENST00000545942 NTSR2O95665 410 aa29.65■■■□□ 2.34
CHD4-214ENST00000545942 CFAP44Q96MT7 982 aa29.65■■■□□ 2.34
CHD4-214ENST00000545942 DDX21Q9NR30 783 aaKnown RBP eCLIP29.65■■■□□ 2.34
CHD4-214ENST00000545942 COPS6Q7L5N1 327 aa29.64■■■□□ 2.34
CHD4-214ENST00000545942 RTKN2Q8IZC4 609 aa29.64■■■□□ 2.34
CHD4-214ENST00000545942 HOXB7P09629 217 aa29.63■■■□□ 2.33
CHD4-214ENST00000545942 FKBP4Q02790 459 aaKnown RBP eCLIP29.63■■■□□ 2.33
CHD4-214ENST00000545942 XAGE3Q8WTP9 111 aa29.63■■■□□ 2.33
CHD4-214ENST00000545942 RPGRQ92834 1020 aaKnown RBP29.63■■■□□ 2.33
CHD4-214ENST00000545942 APAF1O14727 1248 aa29.62■■■□□ 2.33
CHD4-214ENST00000545942 AIMP1Q12904 312 aaKnown RBP29.62■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms