RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SSFA2P28290 1259 aa20.31■□□□□ 0.84
PRPF40A-212ENST00000545856 HSP90AB3PQ58FF7 597 aa20.31■□□□□ 0.84
PRPF40A-212ENST00000545856 INTS3Q68E01 1043 aaKnown RBP20.31■□□□□ 0.84
PRPF40A-212ENST00000545856 PROM2Q8N271 834 aa20.31■□□□□ 0.84
PRPF40A-212ENST00000545856 DNAAF4Q8WXU2 420 aa20.31■□□□□ 0.84
PRPF40A-212ENST00000545856 ADCY9O60503 1353 aa20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 MAP3K15Q6ZN16 1313 aa20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 AFDNP55196 1824 aaKnown RBP20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 TUBGCP6Q96RT7 1819 aa20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 NEXNQ0ZGT2 675 aa20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 DDX19BQ9UMR2 479 aa20.29■□□□□ 0.84
PRPF40A-212ENST00000545856 PI4KAP2A4QPH2 592 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 GNPATO15228 680 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 ANXA1P04083 346 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 CLEC4GQ6UXB4 293 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 RIC3Q7Z5B4 369 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 PI4KAP1Q8N8J0 262 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 ZNF652Q9Y2D9 606 aa20.28■□□□□ 0.84
PRPF40A-212ENST00000545856 ALDH1L1O75891 902 aa20.27■□□□□ 0.84
PRPF40A-212ENST00000545856 MVPQ14764 893 aaKnown RBP20.27■□□□□ 0.84
PRPF40A-212ENST00000545856 LINS1Q8NG48 757 aa20.27■□□□□ 0.84
PRPF40A-212ENST00000545856 PLIN1O60240 522 aa20.26■□□□□ 0.83
PRPF40A-212ENST00000545856 DZIP3Q86Y13 1208 aaKnown RBP20.26■□□□□ 0.83
PRPF40A-212ENST00000545856 AKT1S1Q96B36 256 aa20.26■□□□□ 0.83
PRPF40A-212ENST00000545856 METTL22Q9BUU2 404 aaPredicted RBP20.26■□□□□ 0.83
PRPF40A-212ENST00000545856 EN1Q05925 392 aaPredicted RBP20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 AIMP1Q12904 312 aaKnown RBP20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 TRIM28Q13263 835 aaKnown RBP20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 GIGYF2Q6Y7W6 1299 aaKnown RBP20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 NARFQ9UHQ1 456 aa20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 HDAC5Q9UQL6 1122 aa20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 MAP3K2Q9Y2U5 619 aa20.25■□□□□ 0.83
PRPF40A-212ENST00000545856 TRAPPC3LQ5T215 181 aa20.24■□□□□ 0.83
PRPF40A-212ENST00000545856 UPF1Q92900 1129 aaKnown RBP eCLIP20.24■□□□□ 0.83
PRPF40A-212ENST00000545856 SRCIN1Q9C0H9 1055 aa20.24■□□□□ 0.83
PRPF40A-212ENST00000545856 EZH2Q15910 746 aaKnown RBP20.23■□□□□ 0.83
PRPF40A-212ENST00000545856 TTLL7Q6ZT98 887 aa20.23■□□□□ 0.83
PRPF40A-212ENST00000545856 PIP4K2AP48426 406 aaPredicted RBP20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 BEND3Q5T5X7 828 aa20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 TMEM57Q8N5G2 664 aa20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 CLUAP1Q96AJ1 413 aa20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 STK32BQ9NY57 414 aa20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 ZNF330Q9Y3S2 320 aaPredicted RBP20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 COL24A1Q17RW2 1714 aa20.22■□□□□ 0.83
PRPF40A-212ENST00000545856 CAMTA2O94983 1202 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 RLBP1P12271 317 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 KCNQ4P56696 695 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 TCIRG1Q13488 830 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 PANK1Q8TE04 598 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 USP42Q9H9J4 1324 aaKnown RBP20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 ZPR1O75312 459 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 RFC4P35249 363 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 SLC4A10Q6U841 1118 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 ITPRIPQ8IWB1 547 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 CCDC191Q8NCU4 936 aa20.21■□□□□ 0.83
PRPF40A-212ENST00000545856 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 F6X3S4 739 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 GNAI3P08754 354 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 SLC15A2Q16348 729 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 PARP10Q53GL7 1025 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 ISCA1Q9BUE6 129 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 TFCP2L1Q9NZI6 479 aa20.2■□□□□ 0.82
PRPF40A-212ENST00000545856 C20orf194Q5TEA3 1177 aa20.19■□□□□ 0.82
PRPF40A-212ENST00000545856 ARHGEF1Q92888 912 aaKnown RBP20.19■□□□□ 0.82
PRPF40A-212ENST00000545856 ZBTB3Q9H5J0 574 aa20.19■□□□□ 0.82
PRPF40A-212ENST00000545856 COG6Q9Y2V7 657 aa20.19■□□□□ 0.82
PRPF40A-212ENST00000545856 DEFB132Q7Z7B7 95 aa20.18■□□□□ 0.82
PRPF40A-212ENST00000545856 TBC1D2BQ9UPU7 963 aa20.18■□□□□ 0.82
PRPF40A-212ENST00000545856 LAMB2P55268 1798 aa20.18■□□□□ 0.82
PRPF40A-212ENST00000545856 UTYO14607 1347 aa20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 NEURL1BA8MQ27 555 aa20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 HSP90B1P14625 803 aaKnown RBP20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 ZNF827Q17R98 1081 aa20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 MYD88Q99836 296 aa20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 CWC25Q9NXE8 425 aaPredicted RBP20.17■□□□□ 0.82
PRPF40A-212ENST00000545856 IGKV5-2P06315 115 aa20.16■□□□□ 0.82
PRPF40A-212ENST00000545856 ZNF34Q8IZ26 560 aa20.16■□□□□ 0.82
PRPF40A-212ENST00000545856 CRBNQ96SW2 442 aa20.16■□□□□ 0.82
PRPF40A-212ENST00000545856 TNNQ9UQP3 1299 aa20.16■□□□□ 0.82
PRPF40A-212ENST00000545856 MYH3P11055 1940 aa20.15■□□□□ 0.82
PRPF40A-212ENST00000545856 ZBTB7BO15156 539 aaPredicted RBP20.15■□□□□ 0.82
PRPF40A-212ENST00000545856 GCKRQ14397 625 aa20.15■□□□□ 0.82
PRPF40A-212ENST00000545856 ARXQ96QS3 562 aa20.15■□□□□ 0.82
PRPF40A-212ENST00000545856 GRM8O00222 908 aa20.14■□□□□ 0.81
PRPF40A-212ENST00000545856 ZBTB40Q9NUA8 1239 aa20.14■□□□□ 0.81
PRPF40A-212ENST00000545856 HLFQ16534 295 aa20.13■□□□□ 0.81
PRPF40A-212ENST00000545856 NLGN1Q8N2Q7 840 aa20.13■□□□□ 0.81
PRPF40A-212ENST00000545856 SLC16A10Q8TF71 515 aa20.13■□□□□ 0.81
PRPF40A-212ENST00000545856 C9orf78Q9NZ63 289 aaPredicted RBP20.13■□□□□ 0.81
PRPF40A-212ENST00000545856 PNPLA7Q6ZV29 1317 aa20.13■□□□□ 0.81
PRPF40A-212ENST00000545856 UBTFL1P0CB47 393 aaPredicted RBP20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 FKBP8Q14318 412 aa20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 USPL1Q5W0Q7 1092 aa20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 PPP1R42Q7Z4L9 355 aa20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 USP44Q9H0E7 712 aa20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 CARMIL3Q8ND23 1372 aa20.12■□□□□ 0.81
PRPF40A-212ENST00000545856 PHF14O94880 888 aa20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 PCCAP05165 728 aaPredicted RBP20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 NLRP10Q86W26 655 aa20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 NYXQ9GZU5 481 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms