RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DZIP1Q86YF9 867 aaKnown RBP17.79■□□□□ 0.44
CHD4-210ENST00000544040 ZNF444Q8N0Y2 327 aaPredicted RBP17.79■□□□□ 0.44
CHD4-210ENST00000544040 FBF1Q8TES7 1133 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 PPP1R14CQ8TAE6 165 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 TMOD2Q9NZR1 351 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 A0A1W2PRG0 241 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 PTCD1O75127 700 aaKnown RBP17.79■□□□□ 0.44
CHD4-210ENST00000544040 GTF2A1P52655 376 aaPredicted RBP17.79■□□□□ 0.44
CHD4-210ENST00000544040 GIMAP6Q6P9H5 292 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 ZNF692Q9BU19 519 aaPredicted RBP17.79■□□□□ 0.44
CHD4-210ENST00000544040 ZNF287Q9HBT7 754 aa17.79■□□□□ 0.44
CHD4-210ENST00000544040 SPATA24Q86W54 205 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 RAB34Q9BZG1 259 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 VAT1LQ9HCJ6 419 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 C6orf163Q5TEZ5 329 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 CUL5Q93034 780 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 ANKIB1Q9P2G1 1089 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 PLEKHH1Q9ULM0 1364 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 ZSCAN23Q3MJ62 389 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 RTEL1-TNFRSF6BF6WH68 1400 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 STX6O43752 255 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 DNAI2Q9GZS0 605 aa17.78■□□□□ 0.44
CHD4-210ENST00000544040 TIGD1Q96MW7 591 aa17.77■□□□□ 0.44
CHD4-210ENST00000544040 ZNF165P49910 485 aa17.77■□□□□ 0.44
CHD4-210ENST00000544040 TSHZ3Q63HK5 1081 aa17.77■□□□□ 0.44
CHD4-210ENST00000544040 APBB1IPQ7Z5R6 666 aaPredicted RBP17.77■□□□□ 0.44
CHD4-210ENST00000544040 ANKRD18BA2A2Z9 1011 aa17.77■□□□□ 0.44
CHD4-210ENST00000544040 DDX23Q9BUQ8 820 aaKnown RBP17.77■□□□□ 0.44
CHD4-210ENST00000544040 FCHSD2O94868 740 aa17.77■□□□□ 0.43
CHD4-210ENST00000544040 MXRA7P84157 204 aa17.77■□□□□ 0.43
CHD4-210ENST00000544040 CCDC160A6NGH7 325 aa17.77■□□□□ 0.43
CHD4-210ENST00000544040 FERP16591 822 aa17.77■□□□□ 0.43
CHD4-210ENST00000544040 ZMYND15Q9H091 742 aa17.77■□□□□ 0.43
CHD4-210ENST00000544040 HMGB1P09429 215 aaKnown RBP17.76■□□□□ 0.43
CHD4-210ENST00000544040 IQCA1Q86XH1 822 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 SSH1Q8WYL5 1049 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 WDR78Q5VTH9 848 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 LRRC9Q6ZRR7 1453 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 ZC3H6P61129 1189 aaKnown RBP17.76■□□□□ 0.43
CHD4-210ENST00000544040 AEBP2Q6ZN18 517 aaPredicted RBP17.76■□□□□ 0.43
CHD4-210ENST00000544040 USHBP1Q8N6Y0 703 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 HAND2P61296 217 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 CALML4Q96GE6 196 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 NCOA2Q15596 1464 aa17.76■□□□□ 0.43
CHD4-210ENST00000544040 HCLS1P14317 486 aaPredicted RBP17.76■□□□□ 0.43
CHD4-210ENST00000544040 SF3B2Q13435 895 aaKnown RBP17.76■□□□□ 0.43
CHD4-210ENST00000544040 HSPA4P34932 840 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 TAF7Q15545 349 aaPredicted RBP17.75■□□□□ 0.43
CHD4-210ENST00000544040 BAG4O95429 457 aaKnown RBP17.75■□□□□ 0.43
CHD4-210ENST00000544040 MAP3K12Q12852 859 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 CCDC6Q16204 474 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 DYNC1I1O14576 645 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 MCM6Q14566 821 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 CATIPQ7Z7H3 387 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 SYCP3Q8IZU3 236 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 IKBKGQ9Y6K9 419 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 GRIPAP1Q4V328 841 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 RGS22Q8NE09 1264 aa17.75■□□□□ 0.43
CHD4-210ENST00000544040 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.75■□□□□ 0.43
CHD4-210ENST00000544040 V9GYY5 206 aaPredicted RBP17.75■□□□□ 0.43
CHD4-210ENST00000544040 USP16Q9Y5T5 823 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 PAXBP1Q9Y5B6 917 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 NSD3Q9BZ95 1437 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 A0A087WZG4 1122 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 RARSP54136 660 aaKnown RBP17.74■□□□□ 0.43
CHD4-210ENST00000544040 KIAA0753Q2KHM9 967 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 TSNARE1Q96NA8 513 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 HYPKQ9NX55 129 aa17.74■□□□□ 0.43
CHD4-210ENST00000544040 KIF20AO95235 890 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 STARD3NLO95772 234 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 PRDM11Q9NQV5 511 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 KRT222Q8N1A0 295 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 CETN1Q12798 172 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 TBC1D9Q6ZT07 1266 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 MICU3Q86XE3 530 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 SLC26A6Q9BXS9 759 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 GOLGA6L9A6NEM1 432 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 TRIM47Q96LD4 638 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 TCP11L1Q9NUJ3 509 aa17.73■□□□□ 0.43
CHD4-210ENST00000544040 N4BP3O15049 544 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 TMEM67Q5HYA8 995 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 MSL1Q68DK7 614 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 AFMP43652 599 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 CCDC155Q8N6L0 562 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 GOLIM4O00461 696 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 UBASH3AP57075 661 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 AMPD3Q01432 767 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 FAM114A1Q8IWE2 563 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 ATRIPQ8WXE1 791 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 DNAI1Q9UI46 699 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 RAD54L2Q9Y4B4 1467 aa17.72■□□□□ 0.43
CHD4-210ENST00000544040 IFIT5Q13325 482 aaKnown RBP17.72■□□□□ 0.43
CHD4-210ENST00000544040 PTGS1P23219 599 aa17.71■□□□□ 0.43
CHD4-210ENST00000544040 MICALL1Q8N3F8 863 aa17.71■□□□□ 0.43
CHD4-210ENST00000544040 ZNF219Q9P2Y4 722 aaPredicted RBP17.71■□□□□ 0.43
CHD4-210ENST00000544040 IARSP41252 1262 aaKnown RBP17.71■□□□□ 0.43
CHD4-210ENST00000544040 ANO6Q4KMQ2 910 aa17.71■□□□□ 0.43
CHD4-210ENST00000544040 SAMM50Q9Y512 469 aa17.71■□□□□ 0.43
CHD4-210ENST00000544040 SLC5A1P13866 664 aa17.71■□□□□ 0.43
CHD4-210ENST00000544040 ARL1P40616 181 aaPredicted RBP17.71■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms