RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 ZNF777Q9ULD5 760 aaPredicted RBP8.44□□□□□ -1.06
PRKDC-210ENST00000541488 SPDYE3A6NKU9 549 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 FAM229AH3BQW9 127 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 CLDN10P78369 228 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 TPCN2Q8NHX9 752 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 ZNF594Q96JF6 807 aaPredicted RBP8.43□□□□□ -1.06
PRKDC-210ENST00000541488 NIFKQ9BYG3 293 aaKnown RBP8.43□□□□□ -1.06
PRKDC-210ENST00000541488 CRISPLD1Q9H336 500 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 MKRN1Q9UHC7 482 aaKnown RBP8.43□□□□□ -1.06
PRKDC-210ENST00000541488 HCN2Q9UL51 889 aa8.43□□□□□ -1.06
PRKDC-210ENST00000541488 A6NJR5 290 aa8.42□□□□□ -1.06
PRKDC-210ENST00000541488 LZTS3O60299 673 aaPredicted RBP8.42□□□□□ -1.06
PRKDC-210ENST00000541488 YBX3P16989 372 aaKnown RBP eCLIP8.42□□□□□ -1.064e-13■■□□□ 13.3
PRKDC-210ENST00000541488 TNS4Q8IZW8 715 aa8.42□□□□□ -1.06
PRKDC-210ENST00000541488 OGFOD1Q8N543 542 aa8.42□□□□□ -1.06
PRKDC-210ENST00000541488 DNAAF2Q9NVR5 837 aaKnown RBP8.42□□□□□ -1.06
PRKDC-210ENST00000541488 ARID1BQ8NFD5 2236 aaPredicted RBP8.41□□□□□ -1.06
PRKDC-210ENST00000541488 H2AFB1P0C5Y9 115 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 H2AFB2P0C5Z0 115 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 CCDC102BQ68D86 513 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 TRIM50Q86XT4 487 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 SLC4A9Q96Q91 983 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 ZCCHC2Q9C0B9 1178 aaKnown RBP8.41□□□□□ -1.06
PRKDC-210ENST00000541488 AVENQ9NQS1 362 aaPredicted RBP8.41□□□□□ -1.06
PRKDC-210ENST00000541488 PCDHGC4Q9Y5F7 938 aa8.41□□□□□ -1.06
PRKDC-210ENST00000541488 PALM3A6NDB9 673 aaPredicted RBP8.4□□□□□ -1.06
PRKDC-210ENST00000541488 BACH1O14867 736 aa8.4□□□□□ -1.06
PRKDC-210ENST00000541488 ZBTB7BO15156 539 aaPredicted RBP8.4□□□□□ -1.06
PRKDC-210ENST00000541488 LGR5O75473 907 aa8.4□□□□□ -1.06
PRKDC-210ENST00000541488 FIGNL1Q6PIW4 674 aa8.4□□□□□ -1.06
PRKDC-210ENST00000541488 PLEKHM2Q8IWE5 1019 aa8.4□□□□□ -1.06
PRKDC-210ENST00000541488 IQSEC3Q9UPP2 1182 aaPredicted RBP8.4□□□□□ -1.06
PRKDC-210ENST00000541488 SFI1A8K8P3 1242 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 CDK2AP1O14519 115 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 PAX4O43316 350 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 CD33P20138 364 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 TXKP42681 527 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 ATP1A2P50993 1020 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 PCBP4P57723 403 aaKnown RBP8.39□□□□□ -1.07
PRKDC-210ENST00000541488 MTFR1Q15390 333 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 ARSJQ5FYB0 599 aaPredicted RBP8.39□□□□□ -1.07
PRKDC-210ENST00000541488 KRTAP4-9Q9BYQ8 210 aa8.39□□□□□ -1.07
PRKDC-210ENST00000541488 MAFBQ9Y5Q3 323 aaPredicted RBP8.39□□□□□ -1.07
PRKDC-210ENST00000541488 ATP4AP20648 1035 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 RASA1P20936 1047 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 FAM182BQ5T319 152 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 SLC9A9Q8IVB4 645 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 NACC1Q96RE7 527 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 PPP1R12CQ9BZL4 782 aa8.38□□□□□ -1.07
PRKDC-210ENST00000541488 DCDC2BA2VCK2 349 aa8.37□□□□□ -1.07
PRKDC-210ENST00000541488 LMOD1P29536 600 aaPredicted RBP8.37□□□□□ -1.07
PRKDC-210ENST00000541488 TXLNAP40222 546 aa8.37□□□□□ -1.07
PRKDC-210ENST00000541488 SH3PXD2AQ5TCZ1 1133 aa8.37□□□□□ -1.07
PRKDC-210ENST00000541488 ZNF232Q9UNY5 417 aa8.37□□□□□ -1.07
PRKDC-210ENST00000541488 ATXN7O15265 892 aaPredicted RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 MAPTP10636 758 aaKnown RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 GRIK4Q16099 956 aa8.36□□□□□ -1.07
PRKDC-210ENST00000541488 NBPF1Q3BBV0 1214 aa8.36□□□□□ -1.07
PRKDC-210ENST00000541488 ZNF468Q5VIY5 522 aaPredicted RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 ZNF295-AS1Q8N0V1 137 aa8.36□□□□□ -1.07
PRKDC-210ENST00000541488 TSEN2Q8NCE0 465 aaKnown RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 ZDHHC1Q8WTX9 485 aa8.36□□□□□ -1.07
PRKDC-210ENST00000541488 SCHIP1Q9P0W5 487 aaPredicted RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 COL17A1Q9UMD9 1497 aaPredicted RBP8.36□□□□□ -1.07
PRKDC-210ENST00000541488 A0A1W2PNR3 127 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 TATP17735 454 aaPredicted RBP8.35□□□□□ -1.07
PRKDC-210ENST00000541488 RFX1P22670 979 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 EPHA4P54764 986 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 TNP2Q05952 138 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 CDCA8Q53HL2 280 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 BICDL1Q6ZP65 573 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 L3MBTL2Q969R5 705 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 FMNL2Q96PY5 1086 aa8.35□□□□□ -1.07
PRKDC-210ENST00000541488 TSPAN10Q9H1Z9 355 aaPredicted RBP8.35□□□□□ -1.07
PRKDC-210ENST00000541488 RBM19Q9Y4C8 960 aaKnown RBP8.35□□□□□ -1.07
PRKDC-210ENST00000541488 COL9A3Q14050 684 aaPredicted RBP8.34□□□□□ -1.07
PRKDC-210ENST00000541488 LARGE2Q8N3Y3 721 aa8.34□□□□□ -1.07
PRKDC-210ENST00000541488 GAS2L2Q8NHY3 880 aa8.34□□□□□ -1.07
PRKDC-210ENST00000541488 ELOA3CA0A087WX78 387 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-210ENST00000541488 ELOA3DA6NLF2 546 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-210ENST00000541488 ELNP15502 786 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 NOS2P35228 1153 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 TRIM28Q13263 835 aaKnown RBP8.33□□□□□ -1.08
PRKDC-210ENST00000541488 ELOA3BQ3SY89 546 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 CRTC2Q53ET0 693 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-210ENST00000541488 LARP1Q6PKG0 1096 aaKnown RBP8.33□□□□□ -1.08
PRKDC-210ENST00000541488 NLRP8Q86W28 1048 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 ELOA3Q8NG57 546 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 GJA3Q9Y6H8 435 aa8.33□□□□□ -1.08
PRKDC-210ENST00000541488 KHNYNO15037 678 aaKnown RBP8.32□□□□□ -1.08
PRKDC-210ENST00000541488 SIX5Q8N196 739 aa8.32□□□□□ -1.08
PRKDC-210ENST00000541488 CHMP7Q8WUX9 453 aaPredicted RBP8.32□□□□□ -1.08
PRKDC-210ENST00000541488 ZIC5Q96T25 663 aa8.32□□□□□ -1.08
PRKDC-210ENST00000541488 PRR12Q9ULL5 1215 aa8.32□□□□□ -1.08
PRKDC-210ENST00000541488 HCN4Q9Y3Q4 1203 aa8.32□□□□□ -1.08
PRKDC-210ENST00000541488 SERTM1A2A2V5 107 aa8.31□□□□□ -1.08
PRKDC-210ENST00000541488 DKK1O94907 266 aa8.31□□□□□ -1.08
PRKDC-210ENST00000541488 ADGRE1Q14246 886 aa8.31□□□□□ -1.08
PRKDC-210ENST00000541488 MBTPS1Q14703 1052 aa8.31□□□□□ -1.08
PRKDC-210ENST00000541488 KANK4Q5T7N3 995 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms