RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 WBP1LQ9NX94 342 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 PDZRN3Q9UPQ7 1066 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 HEG1Q9ULI3 1381 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 NPHP1O15259 732 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 CAMTA2O94983 1202 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 PIP4K2AP48426 406 aaPredicted RBP16.04■□□□□ 0.16
COPA-205ENST00000541366 STYK1Q6J9G0 422 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 L3MBTL3Q96JM7 780 aaPredicted RBP16.04■□□□□ 0.16
COPA-205ENST00000541366 SETDB2Q96T68 719 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 KNSTRNQ9Y448 316 aa16.04■□□□□ 0.16
COPA-205ENST00000541366 SCN4AP35499 1836 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 IQCA1LA6NCM1 817 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 SLC34A2O95436 690 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 ZNF790Q6PG37 636 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 IL17REQ8NFR9 667 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 C7orf43Q8WVR3 580 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 MASTLQ96GX5 879 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 ZNF277Q9NRM2 450 aaPredicted RBP16.03■□□□□ 0.16
COPA-205ENST00000541366 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
COPA-205ENST00000541366 KCNQ3O43525 872 aa16.02■□□□□ 0.16
COPA-205ENST00000541366 IL6STP40189 918 aaPredicted RBP16.02■□□□□ 0.16
COPA-205ENST00000541366 EIF4G2P78344 907 aaKnown RBP eCLIP16.02■□□□□ 0.16
COPA-205ENST00000541366 ST5P78524 1137 aa16.02■□□□□ 0.16
COPA-205ENST00000541366 AMER1Q5JTC6 1135 aaPredicted RBP16.02■□□□□ 0.16
COPA-205ENST00000541366 ARFGEF2Q9Y6D5 1785 aa16.01■□□□□ 0.15
COPA-205ENST00000541366 HSPA8P11142 646 aaKnown RBP16.01■□□□□ 0.15
COPA-205ENST00000541366 FAM161AQ3B820 660 aa16.01■□□□□ 0.15
COPA-205ENST00000541366 MAP1SQ66K74 1059 aaPredicted RBP16.01■□□□□ 0.15
COPA-205ENST00000541366 ABHD8Q96I13 439 aa16.01■□□□□ 0.15
COPA-205ENST00000541366 TEFQ10587 303 aa16■□□□□ 0.15
COPA-205ENST00000541366 SOGA3Q5TF21 947 aa16■□□□□ 0.15
COPA-205ENST00000541366 HACL1Q9UJ83 578 aa16■□□□□ 0.15
COPA-205ENST00000541366 RNF123Q5XPI4 1314 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 EPHX2P34913 555 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 FMR1Q06787 632 aaKnown RBP eCLIP15.99■□□□□ 0.151e-7■■■□□ 17.6
COPA-205ENST00000541366 DEFB115Q30KQ5 88 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 CCDC93Q567U6 631 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 DZIP3Q86Y13 1208 aaKnown RBP15.99■□□□□ 0.15
COPA-205ENST00000541366 CNTROBQ8N137 903 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 TEX13AQ9BXU3 409 aaPredicted RBP15.99■□□□□ 0.15
COPA-205ENST00000541366 TIMELESSQ9UNS1 1208 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 ADAMTSL1Q8N6G6 1762 aa15.99■□□□□ 0.15
COPA-205ENST00000541366 SIPA1L3O60292 1781 aaPredicted RBP15.98■□□□□ 0.15
COPA-205ENST00000541366 BCORQ6W2J9 1755 aa15.98■□□□□ 0.15
COPA-205ENST00000541366 PRAMEF22A3QJZ6 481 aa15.98■□□□□ 0.15
COPA-205ENST00000541366 RASSF10A6NK89 507 aa15.98■□□□□ 0.15
COPA-205ENST00000541366 DIAPH1O60610 1272 aaKnown RBP15.98■□□□□ 0.15
COPA-205ENST00000541366 FKBP4Q02790 459 aaKnown RBP eCLIP15.98■□□□□ 0.15
COPA-205ENST00000541366 NBPF5PQ86XG9 351 aaPredicted RBP15.98■□□□□ 0.15
COPA-205ENST00000541366 WDR33Q9C0J8 1336 aaKnown RBP15.97■□□□□ 0.15
COPA-205ENST00000541366 FAM177BA6PVY3 158 aa15.97■□□□□ 0.15
COPA-205ENST00000541366 GNAT3A8MTJ3 354 aa15.97■□□□□ 0.15
COPA-205ENST00000541366 NPM2Q86SE8 214 aaKnown RBP15.97■□□□□ 0.15
COPA-205ENST00000541366 FMNL2Q96PY5 1086 aa15.97■□□□□ 0.15
COPA-205ENST00000541366 USP16Q9Y5T5 823 aa15.97■□□□□ 0.15
COPA-205ENST00000541366 NPR1P16066 1061 aa15.96■□□□□ 0.15
COPA-205ENST00000541366 ABT1Q9ULW3 272 aaKnown RBP15.96■□□□□ 0.15
COPA-205ENST00000541366 U2SURPO15042 1029 aaKnown RBP15.95■□□□□ 0.14
COPA-205ENST00000541366 CC2D1BQ5T0F9 858 aaKnown RBP15.95■□□□□ 0.14
COPA-205ENST00000541366 SYNE4Q8N205 404 aa15.95■□□□□ 0.14
COPA-205ENST00000541366 KLRG2A4D1S0 409 aaPredicted RBP15.94■□□□□ 0.14
COPA-205ENST00000541366 FZD9O00144 591 aa15.94■□□□□ 0.14
COPA-205ENST00000541366 IARSP41252 1262 aaKnown RBP15.94■□□□□ 0.14
COPA-205ENST00000541366 CNGB1Q14028 1251 aaPredicted RBP15.94■□□□□ 0.14
COPA-205ENST00000541366 SLC51AQ86UW1 340 aa15.94■□□□□ 0.14
COPA-205ENST00000541366 PNMA8AQ86V59 439 aaPredicted RBP15.94■□□□□ 0.14
COPA-205ENST00000541366 CCDC85CA6NKD9 419 aa15.93■□□□□ 0.14
COPA-205ENST00000541366 BTBD11A6QL63 1104 aa15.93■□□□□ 0.14
COPA-205ENST00000541366 MAP2K1Q02750 393 aaPredicted RBP15.93■□□□□ 0.14
COPA-205ENST00000541366 GRM1Q13255 1194 aa15.93■□□□□ 0.14
COPA-205ENST00000541366 DDX21Q9NR30 783 aaKnown RBP eCLIP15.93■□□□□ 0.14
COPA-205ENST00000541366 TSKSQ9UJT2 592 aa15.93■□□□□ 0.14
COPA-205ENST00000541366 COL4A5P29400 1685 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 COL3A1P02461 1466 aaPredicted RBP15.92■□□□□ 0.14
COPA-205ENST00000541366 LTBP1Q14766 1721 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 PAXIP1Q6ZW49 1069 aaPredicted RBP15.92■□□□□ 0.14
COPA-205ENST00000541366 RTKN2Q8IZC4 609 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 GAS2L2Q8NHY3 880 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 PHACTR3Q96KR7 559 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 NIP7Q9Y221 180 aaKnown RBP eCLIP15.92■□□□□ 0.14
COPA-205ENST00000541366 GJA3Q9Y6H8 435 aa15.92■□□□□ 0.14
COPA-205ENST00000541366 CEMIPQ8WUJ3 1361 aa15.91■□□□□ 0.14
COPA-205ENST00000541366 CYP4F22Q6NT55 531 aa15.91■□□□□ 0.14
COPA-205ENST00000541366 CLEC4GQ6UXB4 293 aa15.91■□□□□ 0.14
COPA-205ENST00000541366 GPC2Q8N158 579 aa15.91■□□□□ 0.14
COPA-205ENST00000541366 CAPNS2Q96L46 248 aa15.91■□□□□ 0.14
COPA-205ENST00000541366 NBPF26B4DH59 902 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 TRAF5O00463 557 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 EPS15P42566 896 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 TRIM26Q12899 539 aaPredicted RBP15.9■□□□□ 0.14
COPA-205ENST00000541366 HLFQ16534 295 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 NBPF10Q6P3W6 841 aaKnown RBP15.9■□□□□ 0.14
COPA-205ENST00000541366 TPTE2Q6XPS3 522 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 NBPF15Q8N660 670 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 SNED1Q8TER0 1413 aa15.9■□□□□ 0.14
COPA-205ENST00000541366 PER1O15534 1290 aaPredicted RBP15.89■□□□□ 0.13
COPA-205ENST00000541366 MLLT1Q03111 559 aaPredicted RBP15.89■□□□□ 0.13
COPA-205ENST00000541366 ZNF652Q9Y2D9 606 aa15.89■□□□□ 0.13
COPA-205ENST00000541366 AOC2O75106 756 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms