RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SCLT1Q96NL6 688 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 LIMCH1Q9UPQ0 1083 aa11.47□□□□□ -0.57
COL4A6-208ENST00000538570 CCDC94Q9BW85 323 aaPredicted RBP11.46□□□□□ -0.57
COL4A6-208ENST00000538570 BICDL1Q6ZP65 573 aa11.46□□□□□ -0.57
COL4A6-208ENST00000538570 CRACR2BQ8N4Y2 399 aaPredicted RBP11.46□□□□□ -0.57
COL4A6-208ENST00000538570 CKAP2LQ8IYA6 745 aa11.46□□□□□ -0.57
COL4A6-208ENST00000538570 FSIP1Q8NA03 581 aa11.46□□□□□ -0.57
COL4A6-208ENST00000538570 ZNF622Q969S3 477 aaKnown RBP eCLIP11.46□□□□□ -0.57
COL4A6-208ENST00000538570 MACROD2A1Z1Q3 448 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 CTNNA2P26232 953 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 SSFA2P28290 1259 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 TMC6Q7Z403 805 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 CUL5Q93034 780 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 ZNF213O14771 459 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 MTIF2P46199 727 aaKnown RBP11.46□□□□□ -0.58
COL4A6-208ENST00000538570 ALDH1L2Q3SY69 923 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 LRCH2Q5VUJ6 765 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 IQCA1Q86XH1 822 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 THEMISQ8N1K5 641 aaPredicted RBP11.46□□□□□ -0.58
COL4A6-208ENST00000538570 SWAP70Q9UH65 585 aa11.46□□□□□ -0.58
COL4A6-208ENST00000538570 HECW1Q76N89 1606 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 KIAA0586Q9BVV6 1533 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 IVLP07476 585 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 NBPF8Q3BBV2 869 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 SPECC1LQ69YQ0 1117 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 NLRP5P59047 1200 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 MAP3K12Q12852 859 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 A0A087WZG4 1122 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC194A0A1B0GVG4 234 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 GOLGA8AA7E2F4 631 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 GOLGA8BA8MQT2 603 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 ZNF652Q9Y2D9 606 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 ANKRD18BA2A2Z9 1011 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 SNW1Q13573 536 aaKnown RBP11.45□□□□□ -0.58
COL4A6-208ENST00000538570 TNPO1Q92973 898 aaKnown RBP11.45□□□□□ -0.58
COL4A6-208ENST00000538570 RNF41Q9H4P4 317 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-208ENST00000538570 EHMT1Q9H9B1 1298 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 NSD3Q9BZ95 1437 aa11.45□□□□□ -0.58
COL4A6-208ENST00000538570 CETN1Q12798 172 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 ZNF444Q8N0Y2 327 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-208ENST00000538570 RASSF4Q9H2L5 321 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 RANBP6O60518 1105 aaKnown RBP11.44□□□□□ -0.58
COL4A6-208ENST00000538570 FAM114A1Q8IWE2 563 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 NUTM2BA6NNL0 878 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-208ENST00000538570 NUTM2EB1AL46 878 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-208ENST00000538570 AMPD3Q01432 767 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 NUTM2AQ8IVF1 878 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-208ENST00000538570 PRDM11Q9NQV5 511 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 TIAM1Q13009 1591 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC96Q2M329 555 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 MAATS1Q7Z4T9 603 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 MYD88Q99836 296 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 FERMT2Q96AC1 680 aa11.44□□□□□ -0.58
COL4A6-208ENST00000538570 FSD2A1L4K1 749 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 BAG4O95429 457 aaKnown RBP11.43□□□□□ -0.58
COL4A6-208ENST00000538570 ADCY5O95622 1261 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 RSPH14Q9UHP6 348 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CALML4Q96GE6 196 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 PYM1Q9BRP8 204 aaKnown RBP11.43□□□□□ -0.58
COL4A6-208ENST00000538570 MIS18AQ9NYP9 233 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CNPY4Q8N129 248 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 DRC1Q96MC2 740 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 IFIT3O14879 490 aaKnown RBP11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC40Q4G0X9 1142 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CATIPQ7Z7H3 387 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 PAXBP1Q9Y5B6 917 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 C6orf163Q5TEZ5 329 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC82Q8N4S0 544 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 HOMER2Q9NSB8 354 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 RPGRIP1LQ68CZ1 1315 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 DAPK1P53355 1430 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 SLC5A1P13866 664 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 CEP135Q66GS9 1140 aa11.43□□□□□ -0.58
COL4A6-208ENST00000538570 GJB2P29033 226 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 CEP112Q8N8E3 955 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 NKTRP30414 1462 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 PRPF4BQ13523 1007 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 UVSSAQ2YD98 709 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 GBP6Q6ZN66 633 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 ABCA10Q8WWZ4 1543 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 KANK3Q6NY19 840 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 MICALL1Q8N3F8 863 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 ABCC11Q96J66 1382 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 HMGB2P26583 209 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 CCT2P78371 535 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 MCM10Q7L590 875 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 TCHPQ9BT92 498 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 NOP2P46087 812 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 RARSP54136 660 aaKnown RBP11.42□□□□□ -0.58
COL4A6-208ENST00000538570 C10orf67Q8IYJ2 551 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 EHBP1Q8NDI1 1231 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 TBC1D2Q9BYX2 928 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 TCP11L1Q9NUJ3 509 aa11.42□□□□□ -0.58
COL4A6-208ENST00000538570 BIN1O00499 593 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 HSF2BPO75031 334 aa11.41□□□□□ -0.58
COL4A6-208ENST00000538570 IFIT5Q13325 482 aaKnown RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC8Q9H0W5 538 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 CCDC12Q8WUD4 166 aaPredicted RBP11.41□□□□□ -0.58
COL4A6-208ENST00000538570 MYCBPQ99417 103 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms