RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 SCN7AQ01118 1682 aa16.49■□□□□ 0.23
PRKDC-207ENST00000536483 JMYQ8N9B5 988 aa16.48■□□□□ 0.23
PRKDC-207ENST00000536483 CNBD1Q8NA66 436 aa16.48■□□□□ 0.23
PRKDC-207ENST00000536483 RTF1Q92541 710 aaKnown RBP16.48■□□□□ 0.23
PRKDC-207ENST00000536483 CCDC88AQ3V6T2 1871 aa16.48■□□□□ 0.23
PRKDC-207ENST00000536483 POTECB2RU33 542 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 ST5P78524 1137 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 ERFEQ4G0M1 354 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 DPY19L2Q6NUT2 758 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 MCM10Q7L590 875 aa16.47■□□□□ 0.23
PRKDC-207ENST00000536483 COL11A2P13942 1736 aaPredicted RBP16.46■□□□□ 0.23
PRKDC-207ENST00000536483 TIAM2Q8IVF5 1701 aa16.46■□□□□ 0.23
PRKDC-207ENST00000536483 NEFMP07197 916 aa16.46■□□□□ 0.23
PRKDC-207ENST00000536483 SRGNP10124 158 aa16.46■□□□□ 0.23
PRKDC-207ENST00000536483 CNKSR1Q969H4 720 aa16.46■□□□□ 0.23
PRKDC-207ENST00000536483 SNRPA1P09661 255 aaKnown RBP16.45■□□□□ 0.22
PRKDC-207ENST00000536483 DCTN1Q14203 1278 aa16.45■□□□□ 0.22
PRKDC-207ENST00000536483 STYK1Q6J9G0 422 aa16.45■□□□□ 0.22
PRKDC-207ENST00000536483 TAOK3Q9H2K8 898 aa16.45■□□□□ 0.22
PRKDC-207ENST00000536483 TAF7Q15545 349 aaPredicted RBP16.44■□□□□ 0.22
PRKDC-207ENST00000536483 PRPF40BQ6NWY9 871 aaKnown RBP16.44■□□□□ 0.22
PRKDC-207ENST00000536483 MASTLQ96GX5 879 aa16.44■□□□□ 0.22
PRKDC-207ENST00000536483 CLEC4GQ6UXB4 293 aa16.43■□□□□ 0.22
PRKDC-207ENST00000536483 NBPF5PQ86XG9 351 aaPredicted RBP16.43■□□□□ 0.22
PRKDC-207ENST00000536483 FER1L6Q2WGJ9 1857 aa16.43■□□□□ 0.22
PRKDC-207ENST00000536483 LTBP3Q9NS15 1303 aa16.43■□□□□ 0.22
PRKDC-207ENST00000536483 SLX4Q8IY92 1834 aa16.42■□□□□ 0.22
PRKDC-207ENST00000536483 NBPF26B4DH59 902 aa16.42■□□□□ 0.22
PRKDC-207ENST00000536483 COL13A1Q5TAT6 717 aaPredicted RBP16.42■□□□□ 0.22
PRKDC-207ENST00000536483 NBPF10Q6P3W6 841 aaKnown RBP16.42■□□□□ 0.22
PRKDC-207ENST00000536483 NBPF15Q8N660 670 aa16.42■□□□□ 0.22
PRKDC-207ENST00000536483 PNISRQ8TF01 805 aaKnown RBP16.42■□□□□ 0.22
PRKDC-207ENST00000536483 ZNF652Q9Y2D9 606 aa16.42■□□□□ 0.22
PRKDC-207ENST00000536483 BCORQ6W2J9 1755 aa16.41■□□□□ 0.22
PRKDC-207ENST00000536483 ZNF316A6NFI3 1004 aaPredicted RBP16.41■□□□□ 0.22
PRKDC-207ENST00000536483 DDNO94850 711 aaPredicted RBP16.41■□□□□ 0.22
PRKDC-207ENST00000536483 SOGA3Q5TF21 947 aa16.41■□□□□ 0.22
PRKDC-207ENST00000536483 MAPK8IP3Q9UPT6 1336 aa16.41■□□□□ 0.22
PRKDC-207ENST00000536483 FAM177BA6PVY3 158 aa16.4■□□□□ 0.22
PRKDC-207ENST00000536483 C7orf43Q8WVR3 580 aa16.4■□□□□ 0.22
PRKDC-207ENST00000536483 BABAM1Q9NWV8 329 aa16.4■□□□□ 0.22
PRKDC-207ENST00000536483 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
PRKDC-207ENST00000536483 NIP7Q9Y221 180 aaKnown RBP eCLIP16.4■□□□□ 0.22
PRKDC-207ENST00000536483 DICER1Q9UPY3 1922 aaKnown RBP16.39■□□□□ 0.21
PRKDC-207ENST00000536483 TPTE2Q6XPS3 522 aa16.39■□□□□ 0.21
PRKDC-207ENST00000536483 CACNA1SQ13698 1873 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 KLRG2A4D1S0 409 aaPredicted RBP16.38■□□□□ 0.21
PRKDC-207ENST00000536483 POTEIP0CG38 1075 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 POTEJP0CG39 1038 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 NPR1P16066 1061 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 TMPOP42166 694 aaKnown RBP16.38■□□□□ 0.21
PRKDC-207ENST00000536483 HLFQ16534 295 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 CCDC93Q567U6 631 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 RUNDC1Q96C34 613 aa16.38■□□□□ 0.21
PRKDC-207ENST00000536483 RGL2O15211 777 aa16.37■□□□□ 0.21
PRKDC-207ENST00000536483 CHADLQ6NUI6 762 aa16.37■□□□□ 0.21
PRKDC-207ENST00000536483 ADAMTS8Q9UP79 889 aa16.37■□□□□ 0.21
PRKDC-207ENST00000536483 HSPA1AP0DMV8 641 aaKnown RBP16.36■□□□□ 0.21
PRKDC-207ENST00000536483 HSPA1BP0DMV9 641 aaKnown RBP16.36■□□□□ 0.21
PRKDC-207ENST00000536483 RIPK4P57078 832 aa16.36■□□□□ 0.21
PRKDC-207ENST00000536483 LMOD3Q0VAK6 560 aa16.36■□□□□ 0.21
PRKDC-207ENST00000536483 OLFM4Q6UX06 510 aa16.36■□□□□ 0.21
PRKDC-207ENST00000536483 NGEFQ8N5V2 710 aa16.36■□□□□ 0.21
PRKDC-207ENST00000536483 GTF2E1P29083 439 aaPredicted RBP16.35■□□□□ 0.21
PRKDC-207ENST00000536483 EIF4A1P60842 406 aaKnown RBP16.35■□□□□ 0.21
PRKDC-207ENST00000536483 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.21
PRKDC-207ENST00000536483 WDR43Q15061 677 aaKnown RBP eCLIP16.35■□□□□ 0.21
PRKDC-207ENST00000536483 ZNF277Q9NRM2 450 aaPredicted RBP16.35■□□□□ 0.21
PRKDC-207ENST00000536483 ARFGEF2Q9Y6D5 1785 aa16.35■□□□□ 0.21
PRKDC-207ENST00000536483 DLG5Q8TDM6 1919 aa16.35■□□□□ 0.21
PRKDC-207ENST00000536483 IQCA1LA6NCM1 817 aa16.33■□□□□ 0.2
PRKDC-207ENST00000536483 RTKN2Q8IZC4 609 aa16.33■□□□□ 0.2
PRKDC-207ENST00000536483 TNS4Q8IZW8 715 aa16.33■□□□□ 0.2
PRKDC-207ENST00000536483 L3MBTL3Q96JM7 780 aaPredicted RBP16.33■□□□□ 0.2
PRKDC-207ENST00000536483 THUMPD2Q9BTF0 503 aaKnown RBP16.33■□□□□ 0.2
PRKDC-207ENST00000536483 TAF1DQ9H5J8 278 aaPredicted RBP16.33■□□□□ 0.2
PRKDC-207ENST00000536483 CREBZFQ9NS37 354 aa16.33■□□□□ 0.2
PRKDC-207ENST00000536483 MKRN1Q9UHC7 482 aaKnown RBP16.33■□□□□ 0.2
PRKDC-207ENST00000536483 TRIM35Q9UPQ4 493 aa16.33■□□□□ 0.2
PRKDC-207ENST00000536483 ALDH1B1P30837 517 aa16.32■□□□□ 0.2
PRKDC-207ENST00000536483 NUTM1Q86Y26 1132 aa16.32■□□□□ 0.2
PRKDC-207ENST00000536483 ZNF541Q9H0D2 1346 aa16.32■□□□□ 0.2
PRKDC-207ENST00000536483 RRP7AQ9Y3A4 280 aaKnown RBP16.32■□□□□ 0.2
PRKDC-207ENST00000536483 KDM3BQ7LBC6 1761 aa16.31■□□□□ 0.2
PRKDC-207ENST00000536483 CAPN15O75808 1086 aa16.31■□□□□ 0.2
PRKDC-207ENST00000536483 TTLL7Q6ZT98 887 aa16.31■□□□□ 0.2
PRKDC-207ENST00000536483 LDHDQ86WU2 507 aa16.31■□□□□ 0.2
PRKDC-207ENST00000536483 SYNE4Q8N205 404 aa16.31■□□□□ 0.2
PRKDC-207ENST00000536483 ABCC12Q96J65 1359 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 MAP3K15Q6ZN16 1313 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 ERVV-1B6SEH8 477 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 CHL1O00533 1208 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 MYL6BP14649 208 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
PRKDC-207ENST00000536483 EAPPQ56P03 285 aaPredicted RBP16.3■□□□□ 0.2
PRKDC-207ENST00000536483 CCDC146Q8IYE0 955 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 NYXQ9GZU5 481 aa16.3■□□□□ 0.2
PRKDC-207ENST00000536483 ERBB4Q15303 1308 aa16.29■□□□□ 0.2
PRKDC-207ENST00000536483 PASKQ96RG2 1323 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms