RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 FAM229AH3BQW9 127 aa7.47□□□□□ -1.21
USP48-215ENST00000534705 NEUROD1Q13562 356 aa7.47□□□□□ -1.21
USP48-215ENST00000534705 COL9A3Q14050 684 aaPredicted RBP7.47□□□□□ -1.21
USP48-215ENST00000534705 MICALL1Q8N3F8 863 aa7.47□□□□□ -1.21
USP48-215ENST00000534705 SERTAD1Q9UHV2 236 aa7.47□□□□□ -1.21
USP48-215ENST00000534705 IQSEC3Q9UPP2 1182 aaPredicted RBP7.47□□□□□ -1.21
USP48-215ENST00000534705 GRIK4Q16099 956 aa7.46□□□□□ -1.22
USP48-215ENST00000534705 NEUROD4Q9HD90 331 aa7.46□□□□□ -1.22
USP48-215ENST00000534705 NRG1Q02297 640 aaPredicted RBP7.45□□□□□ -1.22
USP48-215ENST00000534705 ADGRE1Q14246 886 aa7.45□□□□□ -1.22
USP48-215ENST00000534705 STARD13Q9Y3M8 1113 aa7.45□□□□□ -1.22
USP48-215ENST00000534705 GPC6Q9Y625 555 aaPredicted RBP7.45□□□□□ -1.22
USP48-215ENST00000534705 BACH1O14867 736 aa7.44□□□□□ -1.22
USP48-215ENST00000534705 HYAL3O43820 417 aaPredicted RBP7.44□□□□□ -1.22
USP48-215ENST00000534705 NID1P14543 1247 aa7.44□□□□□ -1.22
USP48-215ENST00000534705 TRAPPC3LQ5T215 181 aa7.44□□□□□ -1.22
USP48-215ENST00000534705 GOLGA2P5Q9HBQ8 144 aa7.44□□□□□ -1.22
USP48-215ENST00000534705 TMEM229AB2RXF0 380 aa7.43□□□□□ -1.22
USP48-215ENST00000534705 ALBP02768 609 aa7.43□□□□□ -1.22
USP48-215ENST00000534705 TXNRD3Q86VQ6 643 aa7.43□□□□□ -1.22
USP48-215ENST00000534705 PLPP7Q8NBV4 271 aa7.43□□□□□ -1.22
USP48-215ENST00000534705 TBC1D2BQ9UPU7 963 aa7.43□□□□□ -1.22
USP48-215ENST00000534705 ELNP15502 786 aa7.42□□□□□ -1.22
USP48-215ENST00000534705 ADH7P40394 386 aa7.42□□□□□ -1.22
USP48-215ENST00000534705 LRRC69Q6ZNQ3 347 aa7.42□□□□□ -1.22
USP48-215ENST00000534705 LENG1Q96BZ8 264 aaPredicted RBP7.42□□□□□ -1.22
USP48-215ENST00000534705 LILRB5O75023 590 aa7.41□□□□□ -1.22
USP48-215ENST00000534705 TXLNAP40222 546 aa7.41□□□□□ -1.22
USP48-215ENST00000534705 MBTPS1Q14703 1052 aa7.41□□□□□ -1.22
USP48-215ENST00000534705 C8orf86Q6ZUL3 223 aa7.41□□□□□ -1.22
USP48-215ENST00000534705 PARP3Q9Y6F1 533 aa7.41□□□□□ -1.22
USP48-215ENST00000534705 EML1O00423 815 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 RAC1P63000 192 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 IRF5Q13568 498 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 TEAD4Q15561 434 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 C20orf204Q6ZNR8 217 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 SLC30A3Q99726 388 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 KRTAP9-9Q9BYP9 154 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 KRTAP9-4Q9BYQ2 154 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 COG6Q9Y2V7 657 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 USP3Q9Y6I4 520 aa7.4□□□□□ -1.22
USP48-215ENST00000534705 SELPP16109 830 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 UBTFP17480 764 aaKnown RBP7.39□□□□□ -1.23
USP48-215ENST00000534705 NOS2P35228 1153 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 SPEM2Q0P670 501 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 SFSWAPQ12872 951 aaKnown RBP7.39□□□□□ -1.23
USP48-215ENST00000534705 WASHC4Q2M389 1173 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 L3MBTL2Q969R5 705 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 TP53INP1Q96A56 240 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 GDPD2Q9HCC8 539 aa7.39□□□□□ -1.23
USP48-215ENST00000534705 SCHIP1Q9P0W5 487 aaPredicted RBP7.39□□□□□ -1.23
USP48-215ENST00000534705 A0A0A0MRY4 1105 aa7.38□□□□□ -1.23
USP48-215ENST00000534705 WWC1Q8IX03 1113 aa7.38□□□□□ -1.23
USP48-215ENST00000534705 ANKIB1Q9P2G1 1089 aa7.38□□□□□ -1.23
USP48-215ENST00000534705 RAD21O60216 631 aa7.37□□□□□ -1.23
USP48-215ENST00000534705 SEMA3FQ13275 785 aa7.37□□□□□ -1.23
USP48-215ENST00000534705 KRTAP19-1Q8IUB9 90 aa7.37□□□□□ -1.23
USP48-215ENST00000534705 PCDHGA11Q9Y5H2 935 aa7.37□□□□□ -1.23
USP48-215ENST00000534705 LZTS3O60299 673 aaPredicted RBP7.36□□□□□ -1.23
USP48-215ENST00000534705 SOX11P35716 441 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 ABL2P42684 1182 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 KCNQ4P56696 695 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 VAC14Q08AM6 782 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 ZDHHC1Q8WTX9 485 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 RNF112Q9ULX5 631 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 ZNF232Q9UNY5 417 aa7.36□□□□□ -1.23
USP48-215ENST00000534705 EML3Q32P44 896 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 RHPN1Q8TCX5 695 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 C7orf43Q8WVR3 580 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 EFCC1Q9HA90 598 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 USP21Q9UK80 565 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 KCNH4Q9UQ05 1017 aa7.35□□□□□ -1.23
USP48-215ENST00000534705 SERTM1A2A2V5 107 aa7.34□□□□□ -1.23
USP48-215ENST00000534705 POM121Q96HA1 1249 aa7.34□□□□□ -1.23
USP48-215ENST00000534705 CEP63Q96MT8 703 aa7.34□□□□□ -1.23
USP48-215ENST00000534705 BRD7Q9NPI1 651 aa7.34□□□□□ -1.23
USP48-215ENST00000534705 NOD1Q9Y239 953 aa7.34□□□□□ -1.23
USP48-215ENST00000534705 A6NJR5 290 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 PAX4O43316 350 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 TXKP42681 527 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 C1orf53Q5VUE5 145 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 MCTP1Q6DN14 999 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 SSBP4Q9BWG4 385 aaPredicted RBP7.33□□□□□ -1.24
USP48-215ENST00000534705 ZNF358Q9NW07 568 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 CHMP3Q9Y3E7 222 aa7.33□□□□□ -1.24
USP48-215ENST00000534705 RAB44Q7Z6P3 723 aaPredicted RBP7.32□□□□□ -1.24
USP48-215ENST00000534705 SLC9A9Q8IVB4 645 aa7.32□□□□□ -1.24
USP48-215ENST00000534705 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.32□□□□□ -1.24
USP48-215ENST00000534705 UBE2OQ9C0C9 1292 aaKnown RBP7.32□□□□□ -1.24
USP48-215ENST00000534705 JPH1Q9HDC5 661 aaPredicted RBP7.32□□□□□ -1.24
USP48-215ENST00000534705 KRTAP4-8A0A0G2JLE6 195 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 GTF2IP78347 998 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 PSME1Q06323 249 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 SHISA2Q6UWI4 295 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 SLC51AQ86UW1 340 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 FMR1NBQ8N0W7 255 aaPredicted RBP7.31□□□□□ -1.24
USP48-215ENST00000534705 BHMTQ93088 406 aa7.31□□□□□ -1.24
USP48-215ENST00000534705 SFI1A8K8P3 1242 aa7.3□□□□□ -1.24
USP48-215ENST00000534705 EPHA4P54764 986 aa7.3□□□□□ -1.24
USP48-215ENST00000534705 PROSER2Q86WR7 435 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms