RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 WDR44Q5JSH3 913 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 FOXR1Q6PIV2 292 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 STAG2Q8N3U4 1231 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 ABTB2Q8N961 1025 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 COL26A1Q96A83 441 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 RUBCNLQ9H714 662 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 ZDHHC3Q9NYG2 299 aa4.53□□□□□ -1.68
CSDE1-216ENST00000534389 IQSEC3Q9UPP2 1182 aaPredicted RBP4.53□□□□□ -1.68
CSDE1-216ENST00000534389 CCDC9Q9Y3X0 531 aaKnown RBP4.53□□□□□ -1.68
CSDE1-216ENST00000534389 CDC14CA4D256 554 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 SPATA31C2B4DYI2 1134 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 H7C1W4 665 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 FAM13AO94988 1023 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 F11P03951 625 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 MSX1P28360 303 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 MTMR3Q13615 1198 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 C11orf91Q3C1V1 193 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 SH3PXD2AQ5TCZ1 1133 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 ALKBH2Q6NS38 261 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 LRRC69Q6ZNQ3 347 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 FAM13BQ9NYF5 915 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 KLK14Q9P0G3 267 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 SLAIN2Q9P270 581 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 DYRK1BQ9Y463 629 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 HRH3Q9Y5N1 445 aa4.52□□□□□ -1.69
CSDE1-216ENST00000534389 NDUFB5O43674 189 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 EPB42P16452 691 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 PTSQ03393 145 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 CCDC27Q2M243 656 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 NOM1Q5C9Z4 860 aaKnown RBP4.51□□□□□ -1.69
CSDE1-216ENST00000534389 C1orf53Q5VUE5 145 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 PHLDB3Q6NSJ2 640 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 CAPN12Q6ZSI9 719 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 HELQQ8TDG4 1101 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 ZDHHC1Q8WTX9 485 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 IFT43Q96FT9 208 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 CEP63Q96MT8 703 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 STIM2Q9P246 746 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 EGFL7Q9UHF1 273 aa4.51□□□□□ -1.69
CSDE1-216ENST00000534389 GNEQ9Y223 722 aaKnown RBP4.51□□□□□ -1.69
CSDE1-216ENST00000534389 DNMT3AQ9Y6K1 912 aaPredicted RBP4.51□□□□□ -1.69
CSDE1-216ENST00000534389 FANCIQ9NVI1 1328 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 A0A1W2PNR3 127 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 SOWAHDA6NJG2 315 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 MPSTP25325 297 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 MAPK1P28482 360 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 HIRAP54198 1017 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-216ENST00000534389 COX20Q5RI15 118 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 FIGNL1Q6PIW4 674 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 SND1Q7KZF4 910 aaKnown RBP eCLIP4.5□□□□□ -1.69
CSDE1-216ENST00000534389 TXNDC2Q86VQ3 553 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 HSH2DQ96JZ2 352 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 TRERF1Q96PN7 1200 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 SAP130Q9H0E3 1048 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 NUCKS1Q9H1E3 243 aaKnown RBP4.5□□□□□ -1.69
CSDE1-216ENST00000534389 BRPF3Q9ULD4 1205 aa4.5□□□□□ -1.69
CSDE1-216ENST00000534389 GPC6Q9Y625 555 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-216ENST00000534389 ZCCHC6Q5VYS8 1495 aaKnown RBP4.49□□□□□ -1.69
CSDE1-216ENST00000534389 KHNYNO15037 678 aaKnown RBP4.49□□□□□ -1.69
CSDE1-216ENST00000534389 ICMTO60725 284 aa4.49□□□□□ -1.69
CSDE1-216ENST00000534389 MARSP56192 900 aaKnown RBP4.49□□□□□ -1.69
CSDE1-216ENST00000534389 DNM1Q05193 864 aaKnown RBP4.49□□□□□ -1.69
CSDE1-216ENST00000534389 ERICH6BQ5W0A0 696 aa4.49□□□□□ -1.69
CSDE1-216ENST00000534389 CCDC155Q8N6L0 562 aa4.49□□□□□ -1.69
CSDE1-216ENST00000534389 SUSD3Q96L08 255 aa4.49□□□□□ -1.69
CSDE1-216ENST00000534389 QTRT2Q9H974 415 aaKnown RBP4.49□□□□□ -1.69
CSDE1-216ENST00000534389 SENP3-EIF4A1A0A087X0R7 540 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 TGFBR3LH3BV60 316 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 ITGAEP38570 1179 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 ZAP70P43403 619 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 VEGFBP49765 207 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 C8orf34Q49A92 452 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 TREML1Q86YW5 311 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 ZSCAN29Q8IWY8 852 aaPredicted RBP4.48□□□□□ -1.69
CSDE1-216ENST00000534389 RGL4Q8IZJ4 473 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 CMTR1Q8N1G2 835 aaKnown RBP4.48□□□□□ -1.69
CSDE1-216ENST00000534389 PIK3R5Q8WYR1 880 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 MYO19Q96H55 970 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 PNMA5Q96PV4 448 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 PHF24Q9UPV7 400 aa4.48□□□□□ -1.69
CSDE1-216ENST00000534389 DCDC2BA2VCK2 349 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 SLC35F4A4IF30 521 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 ATXN7O15265 892 aaPredicted RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 EIF5BO60841 1220 aaKnown RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 MICAL2O94851 1124 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 RPLP1P05386 114 aaKnown RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 ATP4AP20648 1035 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 EIF1AXP47813 144 aaKnown RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 IDH3AP50213 366 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 ARSDP51689 593 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 NLRP8Q86W28 1048 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 GPR152Q8TDT2 470 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 EDEM1Q92611 657 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 ZIC5Q96T25 663 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 BRD7Q9NPI1 651 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 NXF1Q9UBU9 619 aaKnown RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 LRFN2Q9ULH4 789 aa4.47□□□□□ -1.69
CSDE1-216ENST00000534389 FNDC3AQ9Y2H6 1198 aaKnown RBP4.47□□□□□ -1.69
CSDE1-216ENST00000534389 TERTO14746 1132 aaKnown RBP4.46□□□□□ -1.7
CSDE1-216ENST00000534389 PPFIA3O75145 1194 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms