RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	RTN1	Q16799	776 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	LRRC69	Q6ZNQ3	347 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	ALDH16A1	Q8IZ83	802 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	NGLY1	Q96IV0	654 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	ZCCHC2	Q9C0B9	1178 aa	Known RBP	5.49	□□□□□ -1.53
CD44-238	ENST00000534296	HCN4	Q9Y3Q4	1203 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	IGF1R	P08069	1367 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	DCDC2B	A2VCK2	349 aa		5.48	□□□□□ -1.53
CD44-238	ENST00000534296	WEE1	P30291	646 aa		5.48	□□□□□ -1.53
CD44-238	ENST00000534296	KRT76	Q01546	638 aa		5.48	□□□□□ -1.53
CD44-238	ENST00000534296	POTEA	Q6S8J7	498 aa		5.48	□□□□□ -1.53
CD44-238	ENST00000534296	GDF2	Q9UK05	429 aa	Predicted RBP	5.48	□□□□□ -1.53
CD44-238	ENST00000534296	RNF225	M0QZC1	329 aa	Predicted RBP	5.47	□□□□□ -1.53
CD44-238	ENST00000534296	C21orf2	O43822	256 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	BNIP3L	O60238	219 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	MAPT	P10636	758 aa	Known RBP	5.47	□□□□□ -1.53
CD44-238	ENST00000534296	EPB42	P16452	691 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	GOLGA6L1	Q8N7Z2	621 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	STK32A	Q8WU08	396 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	CEP63	Q96MT8	703 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.47	□□□□□ -1.53
CD44-238	ENST00000534296	ZMIZ1	Q9ULJ6	1067 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	PRR12	Q9ULL5	1215 aa		5.47	□□□□□ -1.53
CD44-238	ENST00000534296	PRMT3	O60678	531 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	PTCD1	O75127	700 aa	Known RBP	5.46	□□□□□ -1.54
CD44-238	ENST00000534296	LGR5	O75473	907 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	THBS1	P07996	1170 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	UBAP2L	Q14157	1087 aa	Known RBP	5.46	□□□□□ -1.54
CD44-238	ENST00000534296	FAM182B	Q5T319	152 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	SH3PXD2A	Q5TCZ1	1133 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	LRRC4B	Q9NT99	713 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	NDFIP2	Q9NV92	336 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	MARK1	Q9P0L2	795 aa		5.46	□□□□□ -1.54
CD44-238	ENST00000534296	ARAF	P10398	606 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	BCR	P11274	1271 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	MARS	P56192	900 aa	Known RBP	5.45	□□□□□ -1.54
CD44-238	ENST00000534296	SRPK2	P78362	688 aa	Known RBP	5.45	□□□□□ -1.54
CD44-238	ENST00000534296	TNP2	Q05952	138 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	PDE4C	Q08493	712 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	TMEM164	Q5U3C3	297 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	IER5	Q5VY09	327 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	PODN	Q7Z5L7	613 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	NEDD1	Q8NHV4	660 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	CLP1	Q92989	425 aa	Known RBP	5.45	□□□□□ -1.54
CD44-238	ENST00000534296	SUSD3	Q96L08	255 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	BRD7	Q9NPI1	651 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	AVEN	Q9NQS1	362 aa	Predicted RBP	5.45	□□□□□ -1.54
CD44-238	ENST00000534296	TIMELESS	Q9UNS1	1208 aa		5.45	□□□□□ -1.54
CD44-238	ENST00000534296	TGFBR3L	H3BV60	316 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	CD33	P20138	364 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	ADH6	P28332	368 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	ZNF385C	Q66K41	422 aa	Predicted RBP	5.44	□□□□□ -1.54
CD44-238	ENST00000534296	B4GALNT3	Q6L9W6	998 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	COL26A1	Q96A83	441 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	HSH2D	Q96JZ2	352 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	PRIMPOL	Q96LW4	560 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	ARID3A	Q99856	593 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	MTMR7	Q9Y216	660 aa		5.44	□□□□□ -1.54
CD44-238	ENST00000534296	SUPT5H	O00267	1087 aa	Known RBP	5.43	□□□□□ -1.54
CD44-238	ENST00000534296	PIK3R2	O00459	728 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	EFS	O43281	561 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	CELA2B	P08218	269 aa	Predicted RBP	5.43	□□□□□ -1.54
CD44-238	ENST00000534296	AMPD1	P23109	780 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	SLCO4C1	Q6ZQN7	724 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	BTLA	Q7Z6A9	289 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	KLRG1	Q96E93	195 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	C1orf115	Q9H7X2	142 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	CXXC1	Q9P0U4	656 aa	Predicted RBP	5.43	□□□□□ -1.54
CD44-238	ENST00000534296	KCNH4	Q9UQ05	1017 aa		5.43	□□□□□ -1.54
CD44-238	ENST00000534296	ATP2B4	P23634	1241 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	CTBS	Q01459	385 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	TYRO3	Q06418	890 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	FKBP5	Q13451	457 aa	Predicted RBP	5.42	□□□□□ -1.54
CD44-238	ENST00000534296	DGKZ	Q13574	1117 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	C11orf91	Q3C1V1	193 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	ZNF468	Q5VIY5	522 aa	Predicted RBP	5.42	□□□□□ -1.54
CD44-238	ENST00000534296	C16orf46	Q6P387	395 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	LYPD4	Q6UWN0	246 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	ACD	Q96AP0	544 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	SCARF2	Q96GP6	870 aa	Predicted RBP	5.42	□□□□□ -1.54
CD44-238	ENST00000534296	MYO19	Q96H55	970 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	PNMA5	Q96PV4	448 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	EFCC1	Q9HA90	598 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	FAM13B	Q9NYF5	915 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	UST	Q9Y2C2	406 aa		5.42	□□□□□ -1.54
CD44-238	ENST00000534296	PHF20L1	A8MW92	1017 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	OIP5	O43482	229 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	ALAS2	P22557	587 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	ARSD	P51689	593 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	KCNQ4	P56696	695 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	SPEM2	Q0P670	501 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	FAM69C	Q0P6D2	419 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	OCLN	Q16625	522 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	GALNT6	Q8NCL4	622 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	MKNK1	Q9BUB5	465 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	QTRT2	Q9H974	415 aa	Known RBP	5.41	□□□□□ -1.54
CD44-238	ENST00000534296	GGA1	Q9UJY5	639 aa		5.41	□□□□□ -1.54
CD44-238	ENST00000534296	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	5.41	□□□□□ -1.54
CD44-238	ENST00000534296	NEURL1B	A8MQ27	555 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	LOR	P23490	312 aa	Predicted RBP	5.4	□□□□□ -1.54

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