RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ANO2Q9NQ90 1003 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 ZDHHC3Q9NYG2 299 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 KLK14Q9P0G3 267 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 DYRK1BQ9Y463 629 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 B4GALNT3Q6L9W6 998 aa7.53□□□□□ -1.2
CD44-236ENST00000533222 RIPOR1Q6ZS17 1223 aa7.53□□□□□ -1.2
CD44-236ENST00000533222 RHPN1Q8TCX5 695 aa7.53□□□□□ -1.2
CD44-236ENST00000533222 GTF3C2Q8WUA4 911 aaPredicted RBP7.53□□□□□ -1.2
CD44-236ENST00000533222 CHMP4AQ9BY43 222 aa7.53□□□□□ -1.2
CD44-236ENST00000533222 DNMT3AQ9Y6K1 912 aaPredicted RBP7.53□□□□□ -1.2
CD44-236ENST00000533222 IVNS1ABPQ9Y6Y0 642 aa7.53□□□□□ -1.2
CD44-236ENST00000533222 TNFRSF10BO14763 440 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 PPFIA3O75145 1194 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 F11P03951 625 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 DEKP35659 375 aaKnown RBP7.52□□□□□ -1.21
CD44-236ENST00000533222 DGKZQ13574 1117 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 ZNF280CQ8ND82 737 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 COL26A1Q96A83 441 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 ZIC5Q96T25 663 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 BCS1LQ9Y276 419 aa7.52□□□□□ -1.21
CD44-236ENST00000533222 PTCD1O75127 700 aaKnown RBP7.51□□□□□ -1.21
CD44-236ENST00000533222 ABL1P00519 1130 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 TATP17735 454 aaPredicted RBP7.51□□□□□ -1.21
CD44-236ENST00000533222 ITGA6P23229 1130 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 RTN1Q16799 776 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 ARSJQ5FYB0 599 aaPredicted RBP7.51□□□□□ -1.21
CD44-236ENST00000533222 C16orf46Q6P387 395 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 BICDL1Q6ZP65 573 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 MYO15BQ96JP2 1530 aa7.51□□□□□ -1.21
CD44-236ENST00000533222 A0A1W2PNR3 127 aa7.5□□□□□ -1.21
CD44-236ENST00000533222 RBM10P98175 930 aaKnown RBP7.5□□□□□ -1.21
CD44-236ENST00000533222 DBN1Q16643 649 aa7.5□□□□□ -1.21
CD44-236ENST00000533222 C1orf53Q5VUE5 145 aa7.5□□□□□ -1.21
CD44-236ENST00000533222 LRRC69Q6ZNQ3 347 aa7.5□□□□□ -1.21
CD44-236ENST00000533222 CCER1Q8TC90 406 aaPredicted RBP7.5□□□□□ -1.21
CD44-236ENST00000533222 MYO19Q96H55 970 aa7.5□□□□□ -1.21
CD44-236ENST00000533222 ARID4AP29374 1257 aaPredicted RBP7.49□□□□□ -1.21
CD44-236ENST00000533222 KCNA1Q09470 495 aa7.49□□□□□ -1.21
CD44-236ENST00000533222 UBAP2LQ14157 1087 aaKnown RBP7.49□□□□□ -1.21
CD44-236ENST00000533222 ZNF837Q96EG3 531 aaPredicted RBP7.49□□□□□ -1.21
CD44-236ENST00000533222 SUSD3Q96L08 255 aa7.49□□□□□ -1.21
CD44-236ENST00000533222 CRISPLD1Q9H336 500 aa7.49□□□□□ -1.21
CD44-236ENST00000533222 CDC14CA4D256 554 aa7.48□□□□□ -1.21
CD44-236ENST00000533222 ETFBKMTQ8IXQ9 262 aa7.48□□□□□ -1.21
CD44-236ENST00000533222 HELQQ8TDG4 1101 aa7.48□□□□□ -1.21
CD44-236ENST00000533222 NAP1L5Q96NT1 182 aaPredicted RBP7.48□□□□□ -1.21
CD44-236ENST00000533222 HCN2Q9UL51 889 aa7.48□□□□□ -1.21
CD44-236ENST00000533222 GNEQ9Y223 722 aaKnown RBP7.48□□□□□ -1.21
CD44-236ENST00000533222 H3BRB1 525 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 GPR25O00155 361 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 ZBTB39O15060 712 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 MPSTP25325 297 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 TRIM22Q8IYM9 498 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 PGBD3Q8N328 593 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 KCTD17Q8N5Z5 321 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 NUCKS1Q9H1E3 243 aaKnown RBP7.47□□□□□ -1.21
CD44-236ENST00000533222 TUT1Q9H6E5 874 aaKnown RBP7.47□□□□□ -1.21
CD44-236ENST00000533222 SHROOM4Q9ULL8 1493 aa7.47□□□□□ -1.21
CD44-236ENST00000533222 LCE2CQ5TA81 110 aa7.46□□□□□ -1.22
CD44-236ENST00000533222 DIEXFQ68CQ4 756 aaKnown RBP7.46□□□□□ -1.22
CD44-236ENST00000533222 VWA5B2Q8N398 1253 aa7.46□□□□□ -1.22
CD44-236ENST00000533222 GTPBP3Q969Y2 492 aaKnown RBP7.46□□□□□ -1.22
CD44-236ENST00000533222 NXF1Q9UBU9 619 aaKnown RBP7.46□□□□□ -1.22
CD44-236ENST00000533222 SUPT16HQ9Y5B9 1047 aaKnown RBP7.46□□□□□ -1.22
CD44-236ENST00000533222 DCDC2BA2VCK2 349 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 H3BM21 787 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 NCLP19338 710 aaKnown RBP7.45□□□□□ -1.22
CD44-236ENST00000533222 ECM1Q16610 540 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 C11orf91Q3C1V1 193 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 ATCAYQ86WG3 371 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 IFT43Q96FT9 208 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 ZCCHC2Q9C0B9 1178 aaKnown RBP7.45□□□□□ -1.22
CD44-236ENST00000533222 DMGDHQ9UI17 866 aaKnown RBP7.45□□□□□ -1.22
CD44-236ENST00000533222 USP20Q9Y2K6 914 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 ERBB4Q15303 1308 aa7.45□□□□□ -1.22
CD44-236ENST00000533222 SOWAHDA6NJG2 315 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 TGFBR3LH3BV60 316 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 RRP9O43818 475 aaKnown RBP7.44□□□□□ -1.22
CD44-236ENST00000533222 ICMTO60725 284 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 GRNP28799 593 aaKnown RBP7.44□□□□□ -1.22
CD44-236ENST00000533222 TYRO3Q06418 890 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 GRIN2CQ14957 1233 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 EFHC2Q5JST6 749 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 TREML1Q86YW5 311 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 GPR161Q8N6U8 529 aaKnown RBP7.44□□□□□ -1.22
CD44-236ENST00000533222 ABHD17AQ96GS6 310 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.44□□□□□ -1.225e-38■■■■■ 698.7
CD44-236ENST00000533222 STIM2Q9P246 746 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 MTMR7Q9Y216 660 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 GJA3Q9Y6H8 435 aa7.44□□□□□ -1.22
CD44-236ENST00000533222 TERTO14746 1132 aaKnown RBP7.43□□□□□ -1.22
CD44-236ENST00000533222 BNIP3LO60238 219 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 BTLAQ7Z6A9 289 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 NLRP8Q86W28 1048 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 STRN4Q9NRL3 753 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 NDFIP2Q9NV92 336 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 EGFL7Q9UHF1 273 aa7.43□□□□□ -1.22
CD44-236ENST00000533222 GPC6Q9Y625 555 aaPredicted RBP7.43□□□□□ -1.22
CD44-236ENST00000533222 ARID4BQ4LE39 1312 aaPredicted RBP7.43□□□□□ -1.22
CD44-236ENST00000533222 CENPJQ9HC77 1338 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms